Mads Nielsen
Professor
Pioneer AI (P1AI)
Øster Voldgade 3
1350 København K
- 2024
- Published
AI supported fetal echocardiography with quality assessment
Taksoee-Vester, C. A., Mikolaj, K., Bashir, Z., Christensen, A. N., Petersen, Olav Bennike Bjørn, Sundberg, K., Feragen, A., Svendsen, M. B. S., Nielsen, Mads & xgz472, xgz472, 2024, In: Scientific Reports. 14, 1, 9 p., 5809.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CARRNN: A Continuous Autoregressive Recurrent Neural Network for Deep Representation Learning From Sporadic Temporal Data
Mehdipour Ghazi, Mostafa, Sørensen, L., Ourselin, S. & Nielsen, Mads, 2024, In: IEEE Transactions on Neural Networks and Learning Systems. 35, 1, p. 792-802Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative analysis of multimodal biomarkers for amyloid-beta positivity detection in Alzheimer's disease cohorts
Mehdipour Ghazi, Mostafa, Selnes, P., Timón-Reina, S., Tecelão, S., Ingala, S., Bjørnerud, A., Kirsebom, B. E., Fladby, T. & Nielsen, Mads, 2024, In: Frontiers in Aging Neuroscience. 16, 1345417.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heterogeneous Learning for Brain Lesion Segmentation, Detection, and Classification
Llambias, Sebastian Nørgaard, Nielsen, Mads & Mehdipour Ghazi, Mostafa, 2024, Proceedings of the 5th Northern Lights Deep Learning Conference ({NLDL}). PMLR, p. 138-144 (Proceedings of Machine Learning Research, Vol. 233).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Local Gamma Augmentation for Ischemic Stroke Lesion Segmentation on MRI
Middleton, Jon Anthony, Bauer, Marko, Johansen, Jacob, Perslev, Mathias, Sheng, K., Ingala, S., Nielsen, Mads & Pai, A., 2024, Proceedings of the 5th Northern Lights Deep Learning Conference ({NLDL}). PMLR, p. 158-164 (Proceedings of Machine Learning Research, Vol. 233).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- E-pub ahead of print
Population-wide evaluation of artificial intelligence and radiologist assessment of screening mammograms
Kühl, J., Elhakim, M. T., Stougaard, S. W., Rasmussen, B. S. B., Nielsen, Mads, Gerke, O., Larsen, L. B. & Graumann, O., 2024, (E-pub ahead of print) In: European Radiology. 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Active Transfer Learning for 3D Hippocampus Segmentation
Wu, J., Kang, Zhongfeng, Llambias, Sebastian Nørgaard, Mehdipour Ghazi, Mostafa & Nielsen, Mads, 2023, Medical Image Learning with Limited and Noisy Data - 2nd International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Proceedings. Xue, Z., Antani, S., Zamzmi, G., Yang, F., Rajaraman, S., Liang, Z., Huang, S. X. & Linguraru, M. G. (eds.). Springer, p. 224-234 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14307 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
An Analysis of Spatial-Spectral Dependence in Hyperspectral Autoencoders
Laprade, W. M., Westergaard, Jesper Cairo, Nielsen, J., Nielsen, Mads & Dahl, A. B., 2023, Image Analysis - 23rd Scandinavian Conference, SCIA 2023, Proceedings. Gade, R., Felsberg, M. & Kämäräinen, J-K. (eds.). Springer, p. 191-202 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13886 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Assessing Breast Cancer Risk by Combining AI for Lesion Detection and Mammographic Texture
Lauritzen, Andreas, von Euler-Chelpin, My Catarina, Lynge, Elsebeth, Vejborg, I., Nielsen, Mads, Karssemeijer, N. & Lillholm, Martin, 2023, In: Radiology. 308, 2, 8 p., e230227.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Breast density and risk of breast cancer
Lynge, Elsebeth, Vejborg, I., Lillholm, Martin, Nielsen, Mads, Napolitano, George & von Euler-Chelpin, My Catarina, 2023, In: International Journal of Cancer. 152, 6, p. 1150-1158 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep Learning-Based Assessment of Cerebral Microbleeds in COVID-19
Ferrer, N. R., Vendela Sagar, M., Klein, Kiril Vadimovic, Kruuse, Christina Rostrup, Nielsen, Mads & Mehdipour Ghazi, Mostafa, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, p. 1-4 4 p. (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Diagnostic test accuracy study of a commercially available deep learning algorithm for ischemic lesion detection on brain MRIs in suspected stroke patients from a non-comprehensive stroke center
Krag, C. H., Müller, F. C., Gandrup, K. L., Raaschou, H., Andersen, Michael Brun, Brejnebøl, M. W., Sagar, M. V., Bojsen, J. A., Rasmussen, B. S., Graumann, O., Nielsen, Mads, Kruuse, Christina Rostrup & Boesen, Mikael Ploug, 2023, In: European Journal of Radiology. 168, 8 p., 111126.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Instance-Specific Augmentation of Brain MRIs with Variational Autoencoders
Middleton, Jon Anthony, Bauer, Marko, Johansen, Jacob, Nielsen, Mads, Sommer, Stefan Horst & Pai, A. S. U., 2023, Medical Applications with Disentanglements : First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings. Springer, p. 49-58 (Lecture Notes in Computer Science, Vol. 13823).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Online transfer learning with partial feedback
Kang, Zhongfeng, Nielsen, Mads, Yang, B., Deng, L. & Lorenzen, S. S., 2023, In: Expert Systems with Applications. 212, 13 p., 118738.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Partial feedback online transfer learning with multi-source domains
Kang, Zhongfeng, Nielsen, Mads, Yang, B. & Mehdipour Ghazi, Mostafa, 2023, In: Information Fusion. 89, p. 29-40Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Robust cross-vendor mammographic texture models using augmentation-based domain adaptation for long-term breast cancer risk
Lauritzen, Andreas, von Euler-Chelpin, My Catarina, Lynge, Elsebeth, Vejborg, I., Nielsen, Mads, Karssemeijer, N. & Lillholm, Martin, 2023, In: Journal of Medical Imaging. 10, 5, p. 1-16 054003.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Multimodal Variational Autoencoders for Semi-Supervised Learning: In Defense of Product-of-Experts
Kutuzova, S., Krause, Oswin, McCloskey, D., Nielsen, Mads & Igel, Christian, Jan 2022, arXiv.org, 29 p.Research output: Working paper › Preprint › Research
- Published
A buffered online transfer learning algorithm with multi-layer network
Kang, Zhongfeng, Yang, B., Nielsen, Mads, Deng, L. & Yang, S., 2022, In: Neurocomputing. 488, p. 581-597 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Artificial Intelligence–based Mammography Screening Protocol for Breast Cancer: Outcome and Radiologist Workload
Lauritzen, Andreas, Rodríguez-Ruiz, A., von Euler-Chelpin, My Catarina, Lynge, Elsebeth, Vejborg, I., Nielsen, Mads, Karssemeijer, N. & Lillholm, Martin, 2022, In: Radiology. 304, 1, p. 41-49Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Augmentation based unsupervised domain adaptation
Orbes-Arteaga, M., Varsavsky, T., Sørensen, L., Nielsen, Mads, Pai, A. S. U., Ourselin, S., Modat , M. & Cardoso, M. J., 2022, arXiv.org, 12 p.Research output: Working paper › Preprint › Research
- Published
- Published
Information Bottleneck: Exact Analysis of (Quantized) Neural Networks
Lorenzen, S. S., Igel, Christian & Nielsen, Mads, 2022, arXiv.org, 19 p.Research output: Working paper › Preprint › Research
- Published
Machine learning and deep learning applications in microbiome research
Hernandez Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads & Rasmussen, Simon, 2022, In: ISME Communications. 2, 7 p., 98.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
Lorenzen, S. S., Nielsen, Mads, Jimenez-Solem, E., Petersen, Tonny Studsgaard, Perner, Anders, Thorsen-Meyer, H., Igel, Christian & Sillesen, Martin Hylleholt, 23 Sep 2021, In: Scientific Reports. 11, 1, 10 p., 18959.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bi-modal Variational Autoencoders for Metabolite Identification Using Tandem Mass Spectrometry
Kutuzova, S., Igel, Christian, Nielsen, Mads & McCloskey, D., 2021, bioRxiv, 22 p.Research output: Working paper › Preprint › Research
- Published
CARRNN: A Continuous Autoregressive Recurrent Neural Network for Deep Representation Learning from Sporadic Temporal Data
Mehdipour Ghazi, Mostafa, Sørensen, L., Ourselin, S. & Nielsen, Mads, 2021, arXiv.org, 11 p.Research output: Working paper › Preprint › Research
- Published
Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients
Jimenez-Solem, E., Petersen, T. S., Hansen, C., Hansen, C., Lioma, C., Igel, C., Boomsma, W., Krause, O., Lorenzen, S., Selvan, R., Petersen, J., Nyeland, M. E., Ankarfeldt, M. Z., Virenfeldt, G. M., Winther-Jensen, M., Linneberg, A., Ghazi, M. M., Detlefsen, N., Lauritzen, A. D., Smith, A. G. & 15 others, , 2021, In: Scientific Reports. 11, 1, 12 p., 3246.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extension of Plant Phenotypes by the Foliar Microbiome
Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Information Processing in Medical Imaging: 27th International Conference, IPMI 2021, Virtual Event, June 28–June 30, 2021, Proceedings
Feragen, A. (ed.), Sommer, Stefan Horst (ed.), Schnabel, J. (ed.) & Nielsen, Mads (ed.), 2021, Springer. 782 p. (Lecture Notes in Computer Science, Vol. 12729).Research output: Book/Report › Anthology › Research › peer-review
Lesion-wise evaluation for effective performance monitoring of small object segmentation
Groothuis, I., Sudre, C. H., Ingala, S., Barnes, J., Gispert, J. D., Sørensen, L., Pai, A., Nielsen, Mads, Ourselin, S., Cardoso, M. J., Barkhof, F. & Modat, M., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, p. 1-8 1159608. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE, Vol. 11596).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Robust parametric modeling of Alzheimer's disease progression
Mehdipour Ghazi, Mostafa, Nielsen, Mads, Pai, A., Modat, M., Jorge Cardoso, M., Ourselin, S. & Sørensen, L., 2021, In: NeuroImage. 225, 12 p., 117460.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Impact of adding breast density to breast cancer risk models: A systematic review
Vilmun, B. M., Vejborg, I., Lynge, E., Lillholm, Martin, Nielsen, Mads, Nielsen, Michael Bachmann & Carlsen, Jonathan Frederik, Jun 2020, In: European Journal of Radiology. 127, 9 p., 109019.Research output: Contribution to journal › Review › Research › peer-review
- Published
Lung Segmentation from Chest X-rays using Variational Data Imputation
Selvan, Raghav, Dam, Erik Bjørnager, Rischel, S., Sheng, K., Nielsen, Mads & Pai, A., 20 May 2020, In: OpenReview.net. 7 p.Research output: Contribution to journal › Conference article › Research
- Published
Chronic Obstructive Pulmonary Disease Quantification Using CT Texture Analysis and Densitometry: Results From the Danish Lung Cancer Screening Trial
Sørensen, L., Nielsen, Mads, Petersen, Jens, Pedersen, J. H., Dirksen, A. & de Bruijne, Marleen, 2020, In: American Journal of Roentgenology. 214, 6, p. 1269-1279Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inflammatory pathway analytes predicting rapid cognitive decline in MCI stage of Alzheimer’s disease
Pillai, J. A., Bena, J., Bebek, G., Bekris, L. M., Bonner-Jackson, A., Kou, L., Pai, A., Sørensen, L., Nielsen, Mads, Rao, S. M., Chance, M., Lamb, B. T. & Leverenz, J. B., 2020, In: Annals of Clinical and Translational Neurology. 7, 7, p. 1225-1239 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kunstig intelligens til cancerdiagnostik i brystkræftscreening
Elhakim, M. T., Graumann, O., Brønsro Larsen, L., Nielsen, Mads & Rasmussen, B. S., 2020, In: Ugeskrift for Laeger. 182, 16, p. 1488-1492 V06200423.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Position paper on COVID-19 imaging and AI: From the clinical needs and technological challenges to initial AI solutions at the lab and national level towards a new era for AI in healthcare
Greenspan, H., Estepar, R. S. J., Niessen, W. J., Siegel, E. & Nielsen, Mads, 2020, In: Medical Image Analysis. 66, 11 p., 101800.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Increasing Accuracy of Optimal Surfaces Using Min-marginal Energies
Petersen, Jens, Arias-Lorza, A. M., Selvan, Raghav, Bos, D., van der Lugt, A., Pedersen, J. H., Nielsen, Mads & de Bruijne, Marleen, 1 Jan 2019, In: IEEE Transactions on Medical Imaging. 38, 7, p. 1559-1568 8599009.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Knowledge Distillation for Semi-supervised Domain Adaptation
Orbes-Arteaga, M., Cardoso, J., Sørensen, L., Igel, Christian, Ourselin, S., Modat, M., Nielsen, Mads & Pai, A., 1 Jan 2019, OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging - 2nd International Workshop, OR 2.0 2019, and 2nd International Workshop, MLCN 2019, Held in Conjunction with MICCAI 2019, Proceedings. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer VS, p. 68-76 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11796 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Change in mammographic density across birth cohorts of Dutch breast cancer screening participants
Napolitano, George, Lynge, Elsebeth, Lillholm, Martin, Vejborg, I. M. M., van Gils, C. H., Nielsen, Mads & Karssemeijer, N., 2019, In: International Journal of Cancer. 145, 11, p. 2954-2962 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
MRI Biomarkers Improve Disease Progression Modeling-Based Prediction of Cognitive Decline
Mehdipour Ghazi, Mostafa, Nielsen, Mads, Pai, A. S. U., Modat , M., Cardoso , J., Ourselin, S. & Sorensen, L., 2019. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Measurement challenge: protocol for international case–control comparison of mammographic measures that predict breast cancer risk
Dench, E., Bond-smith, D., Darcey, E., Lee, G., Aung, Y. K., Chan, A., Cuzick, J., Ding, Z. Y., Evans, C. F., Harvey, J., Highnam, R., Hsieh, M., Kontos, D., Li, S., Mariapun, S., Nickson, C., Nguyen, T. L., Pertuz, S., Procopio, P., Rajaram, N. & 12 others, , 2019, In: BMJ Open. 9, 12, p. 1-6 e031041.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multi-domain adaptation in brain MRI through paired consistency and adversarial learning
Orbes-Arteaga, M., Varsavsky, T., Sudre, C. H., Eaton-Rosen, Z., Haddow, L. J., Sørensen, L., Nielsen, Mads, Pai, A., Ourselin, S., Modat, M., Nachev, P. & Cardoso, M. J., 2019, Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. Wang, Q., Milletari, F., Rieke, N., Nguyen, H. V., Roysam, B., Albarqouni, S., Cardoso, M. J., Xu, Z., Kamnitsas, K., Patel, V., Jiang, S., Zhou, K., Luu, K. & Le, N. (eds.). Springer VS, p. 54-62 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11795 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
On the initialization of long short-term memory networks
Mehdipour Ghazi, Mostafa, Nielsen, Mads, Pai, A., Modat, M., Cardoso, M. J., Ourselin, S. & Sørensen, L., 2019, Neural Information Processing - 26th International Conference, ICONIP 2019, Proceedings. Gedeon, T., Wong, K. W. & Lee, M. (eds.). Springer VS, p. 275-286 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11953 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation
Orbes-Arteaga, M., Sørensen, L., Cardoso , J., Modat , M., Ourselin, S., Sommer, Stefan Horst, Nielsen, Mads, Igel, Christian & Pai, A. S. U., 2019, Proceedings, SPIE 10949, Medical Imaging 2019: Image Processing . SPIE - International Society for Optical Engineering, 6 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Sensitivity of screening mammography by density and texture: a cohort study from a population-based screening program in Denmark
von Euler-Chelpin, My Catarina, Lillholm, Martin, Vejborg, I., Nielsen, Mads & Lynge, Elsebeth, 2019, In: Breast Cancer Research. 21, 1Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The value of hippocampal volume, shape, and texture for 11-year prediction of dementia: a population-based study
Achterberg, H. C., Sørensen, L., Wolters, F. J., Niessen, W. J., Vernooij, M. W., Ikram, M. A., Nielsen, Mads & de Bruijne, Marleen, 2019, In: Neurobiology of Aging. 81, p. 58-66Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Training recurrent neural networks robust to incomplete data: application to Alzheimer’s disease progression modeling
Mehdipour Ghazi, Mostafa, Nielsen, Mads, Pai, A. S. U., Cardoso, M. J., Modat, M., Ourselin, S. & Sørensen, L., 2019, In: Medical Image Analysis. 53, p. 39-46Research output: Contribution to journal › Journal article › Research › peer-review
- Published
UNSUPERVISED MACHINE LEARNING ON BASELINE BRAIN MRI IDENTIFIES MCI SUBGROUP WITH A FASTER DECLINE OVER TWO YEARS COMPARED TO CLASSICAL HIPPOCAMPAL SPARING AD SUBTYPE
Sørensen, L., Pai, A., Nielsen, Mads, Leverenz, J. B. & Pillai, J. A., 2019, In: Alzheimer's & Dementia. 15, 7, p. P1420 1 p., P4-326.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- 2018
- Published
Subclinical depressive symptoms during late midlife and structural brain alterations: A longitudinal study of Danish men born in 1953
Osler, Merete, Sørensen, L., Rozing, M., Calvo, O. P., Nielsen, Mads & Rostrup, E., Apr 2018, In: Human Brain Mapping. 39, 4, p. 1789-1795Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ensemble support vector machine classification of dementia using structural MRI and mini-mental state examination
Sørensen, L. & Nielsen, Mads, 2018, In: Journal of Neuroscience Methods. 302, SI, p. 66-74Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Robust training of recurrent neural networks to handle missing data for disease progression modeling
Mehdipour Ghazi, Mostafa, Nielsen, Mads, Pai, A. S. U., Cardoso, M. J., Modat, M., Ourselin, S. & Sørensen, L., 2018. 9 p.Research output: Contribution to conference › Paper › Research
- Published
Screening mammography: benefit of double reading by breast density
von Euler-Chelpin, My Catarina, Lillholm, Martin, Napolitano, George, Vejborg, I., Nielsen, Mads & Lynge, Elsebeth, 2018, In: Breast Cancer Research and Treatment. 171, 3, p. 767-776 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simultaneous synthesis of FLAIR and segmentation of white matter hypointensities from T1 MRIs
Orbes-Arteaga, M., Cardoso, M. J., Sørensen, L., Modat, M., Ourselin, S., Nielsen, Mads & Pai, A. S. U., 2018. 8 p.Research output: Contribution to conference › Paper › Research
- Published
The combined effect of mammographic texture and density on breast cancer risk: a cohort study
Wanders, J. O. P., van Gils, C. H., Karssemeijer, N., Holland, K., Kallenberg, M., Peeters, P. H. M., Nielsen, Mads & Lillholm, Martin, 2018, In: Breast Cancer Research. 20, 10 p., 36.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Risk stratification of women with false-positive test results in mammography screening based on mammographic morphology and density: a case control study
Winkel, R. R., von Euler-Chelpin, My Catarina, Lynge, Elsebeth, Diao, P., Lillholm, Martin, Kallenberg, M., Forman, Julie Lyng, Nielsen, Michael Bachmann, Uldall, W. Y., Nielsen, Mads & Vejborg, I. M. M., Aug 2017, In: Cancer Epidemiology. 49, p. 53-60 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment
Pai, A. S. U., Pillai, J. A., Sørensen, L., Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, Jul 2017, In: Alzheimer's & Dementia. 13, 7, supplement, p. P1356 1 p., P4-225.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Density-based non-rigid registration of diffusion-weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, Apr 2017.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images
Pai, A. S. U., Sommer, Stefan Horst, Raket, L. L., Kühnel, L., Darkner, Sune, Sørensen, L. & Nielsen, Mads, 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Müller, H., Kelm, B. M., Arbel, T., Cai, W., Cardoso, M. J., Langs, G., Menze, B., Metaxas, D., Montillo, A., Wells, W. M., Zhang, S., Chung, A. C. S., Jenkinson, M. & Ribbens, A. (eds.). Springer, p. 151-159 9 p. (Lecture notes in computer science, Vol. 10081).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Characterization of errors in deep learning-based brain MRI segmentation
Pai, A. S. U., Teng, Y., Blair, J. P. M., Kallenberg, M. G. J., Dam, Erik Bjørnager, Sommer, Stefan Horst, Igel, Christian & Nielsen, Mads, 2017, Deep learning for medical image analysis. Zhou, S. K., Greenspan, H. & Shen, D. (eds.). Academic Press, p. 223–242 20 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Convolutional neural networks for segmentation and object detection of human semen
Nissen, M. S., Krause, Oswin, Almstrup, Kristian, Kjærulff, S., Nielsen, T. T. & Nielsen, Mads, 2017, Image Analysis: 20th Scandinavian Conference, SCIA 2017, Tromsø, Norway, June 12–14, 2017, Proceedings, Part I. Sharma, P. & Bianchi, F. M. (eds.). Springer, Vol. Part 1. p. 397-406 10 p. (Lecture notes in computer science, Vol. 10269).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Differential diagnosis of mild cognitive impairment and Alzheimer’s disease using structural MRI cortical thickness, hippocampal shape, hippocampal texture, and volumetry
Sørensen, L., Igel, Christian, Pai, A. S. U., Balas, I., Anker, C., Lillholm, Martin & Nielsen, Mads, 2017, In: NeuroImage: Clinical. 13, p. 470-482 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings
Cardoso, M. J. (ed.), Arbel, T. (ed.), Ferrante, E. (ed.), Pennec, X. (ed.), Dalca, A. V., Parisot, S. (ed.), Joshi, S. (ed.), Batmanghelich, N. K. (ed.), Sotiras, A. (ed.), Nielsen, Mads (ed.), Sabuncu, M. R. (ed.), Fletcher, T. (ed.), Shen, L. (ed.), Durrleman, S. (ed.) & Sommer, Stefan Horst (ed.), 2017, Springer. 248 p. (Lecture notes in computer science, Vol. 10551).Research output: Book/Report › Anthology › Research › peer-review
- 2016
- Published
Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation
Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 6 p. 978406. (Progress in Biomedical Optics and Imaging).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease
Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, In: SPIE Journal of Medical Imaging. 3, 1, 11 p., 014005.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Do dementia biomarkers have a sigmoid trajectory? Insights from non-linear mixed effects modeling
Pai, A. S. U., Sommer, Stefan Horst, Raket, L. L., Sørensen, L. & Nielsen, Mads, 2016, In: Alzheimer's & Dementia. 12, 7, Supplement, p. P356 1 p., O4-09-06.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Early detection of Alzheimer's disease using MRI hippocampal texture
Sørensen, L., Igel, Christian, Hansen, N. L., Osler, Merete, Lauritzen, Martin, Rostrup, Egill & Nielsen, Mads, 2016, In: Human Brain Mapping. 37, 3, p. 1148-1161 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Learning density independent texture features
Kallenberg, M. G. J., Nielsen, Mads, Holland, K., Karssemeijer, N., Igel, Christian & Lillholm, Martin, 2016, Breast Imaging: 13th International Workshop, IWDM 2016, Malmö, Sweden, June 19-22, 2016, Proceedings. Tingberg, A., Lång, K. & Timberg, P. (eds.). Springer, p. 299-306 8 p. (Lecture notes in computer science, Vol. 9699).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
MCI trial enrichment using MRI hippocampus texture
Sørensen, L., Igel, Christian & Nielsen, Mads, 2016, In: Alzheimer's & Dementia. 12, 7, Supplement, p. P108–P109 2 p., IC-P-146.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Mammographic density and structural features can individually and jointly contribute to breast cancer risk assessment in mammography screening: a case-control study
Winkel, R. R., von Euler-Chelpin, My Catarina, Nielsen, Mads, Petersen, P. K., Lillholm, Martin, Nielsen, Michael Bachmann, Lynge, Elsebeth, Uldall, W. Y. & Vejborg, I. M. M., 2016, In: B M C Cancer. 16, 12 p., 414.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Supervised hub-detection for brain connectivity
Kasenburg, N., Liptrot, M. G., Reislev, N. L., Garde, Ellen, Nielsen, Mads & Feragen, A., 2016, Medical Imaging 2016: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 9 p. 978409. (Progress in Biomedical Optics and Imaging; No. 39, Vol. 17).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Training shortest-path tractography: automatic learning of spatial priors
Kasenburg, N., Liptrot, M. G., Reislev, N. L., Ørting, S. N., Nielsen, Mads, Garde, E. & Feragen, A., 2016, In: NeuroImage. 130, p. 63-76 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unsupervised deep learning applied to breast density segmentation and mammographic risk scoring
Kallenberg, M. G. J., Petersen, P. K., Nielsen, Mads, Ng, A. Y., Diao, P., Igel, Christian, Vachon, C. M., Holland, K., Winkel, R. R., Karssemeijer, N. & Lillholm, Martin, 2016, In: IEEE Transactions on Medical Imaging. 35, 5, p. 1322-1331 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, p. 35-47Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , p. 35-47 13 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Assessing breast cancer masking risk in full field digital mammography with automated texture analysis
Kallenberg, M. G. J., Lillholm, Martin, Diao, P., Holland, K., Karssemeijer, N., Igel, Christian & Nielsen, Mads, 2015, 7th International Workshop on Breast Densitometry and Cancer Risk Assessment (Non-CME). University of California, p. 109 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review
- Published
Assessing breast cancer masking risk with automated texture analysis in full field digital mammography
Kallenberg, M. G. J., Lillholm, Martin, Diao, P., Petersen, K., Holland, K., Karssemeijer, N., Igel, Christian & Nielsen, Mads, 2015, Breast Imaging and Interventional. Radiological Society of North America, Inc, p. 218 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review
- Published
Automated texture scoring for assessing breast cancer masking risk in full field digital mammography
Kallenberg, M. G. J., Petersen, P. K., Lillholm, Martin, Jørgensen, D. R., Diao, P., Holland, K., Karssemeijer, N., Igel, Christian & Nielsen, Mads, 2015, In: Insights into Imaging. 6, 1, Supplement, 1 p., B-0212.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Automatic segmentation of high-and low-field knee MRIs using knee image quantification with data from the osteoarthritis initiative
Dam, Erik Bjørnager, Lillholm, Martin, Marques, J. & Nielsen, Mads, 2015, In: SPIE Journal of Medical Imaging. 2, 2, 13 p., 024001.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies
Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Diffeomorphic image registration with automatic time-step adjustment
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 1085-1088 4 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Hippocampal MRI texture is related to hippocampal glucose metabolism
Sørensen, L., Pai, A. S. U., Igel, Christian & Nielsen, Mads, 2015, In: Alzheimer's & Dementia. 11, 7, Supplement, p. P55-P56 2 p., IC-P-077.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Hippocampal texture predicts ad conversion in amyloid positive mild cognitively impaired subjects
Nielsen, Mads, Igel, Christian & Sørensen, L., 2015, In: Neurodegenerative Diseases. 15, Suppl. 1, p. 262 1 p., ADPD5-0947.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Hippocampus MRI T1 texture's relation to established Alzheimer's disease biomarkers and prediction of progression
Nielsen, Mads, Sørensen, L., Pai, A. S. U., Igel, Christian & Lillholm, Martin, 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Improved Alzheimer's disease diagnostic performance using structural MRI: validation of the MRI combination biomarker that won the CADDementia challenge
Sørensen, L., Lillholm, Martin, Pai, A. S. U., Balas, I., Anker, C., Igel, Christian & Nielsen, Mads, 2015, In: Insights into Imaging. 6, Supplement 1, 1 p., B-0077.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Inter-observer agreement according to three methods of evaluating mammographic density and parenchymal pattern in a case control study: impact on relative risk of breast cancer
Winkel, R. R., von Euler-Chelpin, My Catarina, Nielsen, Mads, Diao, P., Nielsen, Michael Bachmann, Uldall, W. Y. & Vejborg, I. M. M., 2015, In: BMC Cancer. 15, 14 p., 274.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Locally orderless registration for diffusion weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, 2015, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 305-312 8 p. (Lecture notes in computer science, Vol. 9350).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Multimodal brain extraction from structural MRI using co-registered FDG-PET
Jensen, H. G., Federspiel, F. V. K., Ptito, Maurice, Nielsen, Mads, Gjedde, Albert, Keller, S. H., Law, Ian, Kupers, Ron & Darkner, Sune, 2015. 12 p.Research output: Contribution to conference › Paper › Research
- Published
Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015)
Pennec, X. (ed.), Joshi, S. (ed.), Nielsen, Mads (ed.), Fletcher, T. P. (ed.), Durrleman, S. (ed.) & Sommer, Stefan Horst (ed.), 2015, INRIA. 173 p.Research output: Book/Report › Anthology › Research
- Published
Relevance sampling
Nielsen, Mads, Markussen, Bo & Loog, M., 2015, Proceedings of the Eight Workshop on Information Theoretic Methods in Science and Engineering. Rissanen, J., Harremoës, P., Forchhammer, S., Roos, T. & Myllymäki, P. (eds.). Department of Computer Science, University of Helsinki , p. 35-38 4 p. (Series of Publications B, Vol. B-2015-1).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge
Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M. & 30 others, , 2015, In: NeuroImage. 111, p. 562-579 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
- Published
Computer based method for determining the size of an objects in an image
Pai, A. S. U., Sørensen, L., Dam, E. B., Lillholm, Martin & Nielsen, Mads, 4 Dec 2014, Priority date 4 Dec 2014Research output: Patent
- Published
A method to determine the mammographic regions that show early changes due to the development of breast cancer
Karemore, G., Nielsen, Mads, Karssemeijer, N. & Brandt, S. S., 2014, In: Physics in Medicine and Biology. 59, 22, p. 6759-6773 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Alzheimer's disease diagnostic performance of a multi-atlas hippocampal segmentation method using the harmonized hippocampal protocol
Anker, C., Sørensen, L., Pai, A. S. U., Lyksborg, M., Lillholm, Martin, Conradsen, K., Larsen, R. & Nielsen, Mads, 2014. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Automated hippocampal segmentation using new standardized manual segmentations from the harmonized hippocampal protocol
Anker, C., Pai, A. S. U., Sørensen, L., Lyksborg, M., Conradsen, K., Larsen, R. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P33 1 p., IC-P-058.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Automated hippocampal segmentation using new standardized manual segmentations from the harmonized hippocampal protocol
Anker, C., Pai, A. S. U., Sørensen, L., Lyksborg, M., Conradsen, K., Larsen, R. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P415-P416 2 p., P1-288.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Brain region's relative proximity as marker for Alzheimer's disease based on structural MRI
Erleben, L. L., Sørensen, L. E., Pai, A. S. U., Dam, Erik Bjørnager, Nielsen, Mads & Initiative, A. D. N., 2014, In: BMC Medical Imaging. 14, 1, 12 p., 21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Breast tissue segmentation and mammographic risk scoring using deep learning
Petersen, P. K., Nielsen, Mads, Diao, P., Karssemeijer, N. & Lillholm, Martin, 2014, Breast imaging: 12th International Workshop, IWDM 2014, Gifu City, Japan, June 29 – July 2, 2014. Proceedings. Fujita, H., Hara, T. & Muramatsu, C. (eds.). Springer Science+Business Media, p. 88-94 7 p. (Lecture notes in computer science, Vol. 8539).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
ID: 542361
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Brain region's relative proximity as marker for Alzheimer's disease based on structural MRI
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Smoothing images creates corners
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Distribution, size, shape, growth potential and extent of abdominal aortic calcified deposits predict mortality in postmenopausal women
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