Lars Juhl Jensen

Lars Juhl Jensen

Professor, Group Leader, Professor

Member of:

    ORCID: 0000-0001-7885-715X

    Publication year:
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    1 - 25 out of 234Page size: 25
    1. 2023
    2. Published

      About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature

      Tantoso, E., Eisenhaber, B., Sinha, S., Jensen, Lars Juhl & Eisenhaber, F., 2023, In: Biology Direct. 18, 17 p., 7.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration

      Kokoli, M., Karatzas, E., Baltoumas, F. A., Schneider, R., Pafilis, E., Paragkamian, S., Doncheva, Nadezhda Tsankova, Jensen, Lars Juhl & Pavlopoulos, G. A., 2023, In: NAR Genomics and Bioinformatics. 5, 2, 8 p., lqad053.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis

      Yarani, R., Palasca, Oana, Doncheva, Nadezhda Tsankova, Anthon, Christian, Pilecki, B., Svane, C. A. S., Mirza, A. H., Litman, Thomas, Holmskov, U., Bang-Berthelsen, C. H., Vilien, M., Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2023, In: Frontiers in Molecular Biosciences. 9, 1081176.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Did the early full genome sequencing of yeast boost gene function discovery?

      Tantoso, E., Eisenhaber, B., Sinha, S., Jensen, Lars Juhl & Eisenhaber, F., 2023, In: Biology Direct. 18, 11 p., 46.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Differential Expression of the β3 Subunit of Voltage-Gated Ca2+ Channel in Mesial Temporal Lobe Epilepsy

      Kjær, C., Palasca, Oana, Barzaghi, G., Bak, Lasse Kristoffer, Durhuus, R. K. J., Jakobsen, Emil, Pedersen, Louise, Bartels, Emil Daniel, Woldbye, David Paul Drucker, Pinborg, Lars Hageman & Jensen, Lars Juhl, 2023, In: Molecular Neurobiology. 60, p. 5755–5769

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Hunting for the elusive target antigen in gestational alloimmune liver disease (GALD)

      Rieneck, K., Rasmussen, K. K., Schoof, Erwin Marten, Clausen, F. B., Holze, H., Bergholt, Thomas, Jørgensen, M. H., Christensen, Vibeke Brix, Almaas, R., Jordal, P. L., Locard-Paulet, Marie, Runager, K., Nielsen, L. K., Schlotmann, Balthasar Clemens, Weischenfeldt, Joachim Lütken, Jensen, Lars Juhl & Dziegiel, Morten Hanefeld, 2023, In: PLoS ONE. 18, 10, 25 p., e0286432.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. E-pub ahead of print

      Impact of acute alcohol consumption on circulating microbiome in asymptomatic alcohol-related liver disease

      Israelsen, M., Alvarez Silva, Maria Camila, Madsen, B. S., Hansen, C. D., Torp, N. C., Johansen, S., Hansen, J. K., Prier Lindvig, K., Insonere, J., Riviere, V., Juel, H. B., Brejnrod, A., Jensen, Lars Juhl, Thiele, M., Lelouvier, B., Hansen, Torben, Arumugam, Mani & Krag, A., 2023, (E-pub ahead of print) In: Gut. gutjnl-2023-330360.

      Research output: Contribution to journal › Letter › Research › peer-review

    9. Published

      Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae

      Hernández Guzmán, Ulises, Aksnes, H., Ree, R., Krogh, Nicolai, Jakobsson, M. E., Jensen, Lars Juhl, Arnesen, T. & Olsen, Jesper Velgaard, 2023, In: Nature Communications. 14, 4517.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Metastatic Infiltration of Nervous Tissue and Periosteal Nerve Sprouting in Multiple Myeloma-Induced Bone Pain in Mice and Human

      Diaz-delCastillo, M., Palasca, Oana, Nemler, T. T., Thygesen, D. M., Chávez-Saldaña, N. A., Vázquez-Mora, J. A., Ponce Gomez, L. Y., Jensen, Lars Juhl, Evans, H., Andrews, R. E., Mandal, A., Neves, D., Mehlen, P., Caruso, J. P., Dougherty, P. M., Price, T. J., Chantry, A., Lawson, M. A., Andersen, T. L., Jimenez-Andrade, J. M. & Heegaard, Anne-Marie, 2023, In: The Journal of Neuroscience. 43, 29, p. 5414-5430

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. E-pub ahead of print

      Pancreatic cancer symptom trajectories from Danish registry data and free text in electronic health records

      Hjaltelin, Jessica Xin, Novitski, Sif Ingibergsdóttir, Jørgensen, Isabella Friis, Siggaard, T., Vulpius, Siri Amalie, Westergaard, David, Johansen, Julia Sidenius, Chen, I. M., Jensen, Lars Juhl & Brunak, Søren, 2023, (E-pub ahead of print) In: eLife. 12

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Pharos 2023: an integrated resource for the understudied human proteome

      Kelleher, K. J., Sheils, T. K., Mathias, S. L., Yang, J. J., Metzger, V. T., Siramshetty, V. B., Nguyen, D., Jensen, Lars Juhl, Vidovic, D., Schurer, S. C., Holmes, J., Sharma, K. R., Pillai, A., Bologa, C. G., Edwards, J. S., Mathe, E. A. & Oprea, T., 2023, In: Nucleic Acids Research. 51, D1, p. D1405-D1416 12 p., gkac1033.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Recent advances in kinase signaling network profiling by mass spectrometry

      Franciosa, Giulia, Locard-Paulet, Marie, Jensen, Lars Juhl & Olsen, Jesper Velgaard, 2023, In: Current Opinion in Chemical Biology. 73, 11 p., 102260.

      Research output: Contribution to journal › Review › Research › peer-review

    14. Published

      S1000: a better taxonomic name corpus for biomedical information extraction

      Luoma, J., Nastou, Katerina, Ohta, T., Toivonen, H., Pafilis, E., Jensen, Lars Juhl & Pyysalo, S., 2023, In: Bioinformatics. 39, 6, 8 p., btad369.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

      Szklarczyk, D., Kirsch, Rebecca, Koutrouli, Mikaela, Nastou, Katerina, Mehryary, F., Hachilif, R., Gable, A. L., Fang, T., Doncheva, Nadezhda Tsankova, Pyysalo, S., Bork, P., Jensen, Lars Juhl & von Mering, C., 2023, In: Nucleic Acids Research. 51, D1, p. D638-D646 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      eggNOG 6.0: enabling comparative genomics across 12 535 organisms

      Hernández-Plaza, A., Szklarczyk, D., Botas, J., Cantalapiedra, C. P., Giner-Lamia, J., Mende, D. R., Kirsch, Rebecca, Rattei, T., Letunic, I., Jensen, Lars Juhl, Bork, P., von Mering, C. & Huerta-Cepas, J., 2023, In: Nucleic Acids Research. 51, D1, p. D389-D394 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. 2022
    18. Published

      A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research

      Zahoránszky-Kőhalmi, G., Siramshetty, V. B., Kumar, P., Gurumurthy, M., Grillo, B., Mathew, B., Metaxatos, D., Backus, M., Mierzwa, T., Simon, R., Grishagin, I., Brovold, L., Mathé, E. A., Hall, M. D., Michael, S. G., Godfrey, A. G., Mestres, J., Jensen, Lars Juhl & Oprea, T. I., 2022, In: Journal of Chemical Information and Modeling. 62, 3, p. 718-729

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      A knowledge graph to interpret clinical proteomics data

      Santos, A., Colaço, A. R., Nielsen, Annelaura Bach, Niu, Lili, Strauss, Maximilian, Geyer, P. E., Coscia, F., Albrechtsen, Nicolai Jacob Wewer, Mundt, F., Jensen, Lars Juhl & Mann, Matthias, 2022, In: Nature Biotechnology. 40, p. 692–702

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment

      Bernard, C., Locard-Paulet, Marie, Noël, C., Duchateau, M., Giai Gianetto, Q., Moumen, B., Rattei, T., Hechard, Y., Jensen, Lars Juhl, Matondo, M. & Samba-Louaka, A., 2022, In: Nature Communications. 13, 1, 14 p., 4104.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks

      Doncheva, Nadezhda Tsankova, Morris, J. H., Holze, H., Kirsch, Rebecca, Nastou, Katerina, Cuesta-Astroz, Y., Rattei, T., Szklarczyk, D., Von Mering, C. & Jensen, Lars Juhl, 2022, In: Journal of Proteome Research. 22, 2, p. 637-646

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Differentially Expressed miRNAs in Ulcerative Colitis and Crohn's Disease

      Yarani, R., Shojaeian, A., Palasca, Oana, Doncheva, Nadezhda Tsankova, Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2022, In: Frontiers in Immunology. 13, 21 p., 865777.

      Research output: Contribution to journal › Review › Research › peer-review

    23. Published

      Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration

      Grissa, Dhouha, Junge, A., Oprea, T. I. & Jensen, Lars Juhl, 2022, In: Database : the journal of biological databases and curation. 2022, 2022, 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies

      Locard-Paulet, Marie, Palasca, Oana & Jensen, Lars Juhl, 2022, In: PLOS Computational Biology. 18, 10, 20 p., e1010604.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix

      Versace, E., Sgadò, P., George, J., Loveland, J. L., Ward, J., Thorpe, P., Jensen, Lars Juhl, Spencer, K. A., Paracchini, S. & Vallortigara, G., 2022, In: Scientific Reports. 12, 1, 12 p., 12086.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Myeloma-induced bone pain: lessons learnt from a localized, immunocompetent mouse model

      Diaz-delCastillo, M., Nemler, T., Thygesen, D. M., Chavez-Saldana, N. A., Vazquez-Mora, J. A., Palasca, Oana, Jensen, Lars Juhl, Evans, H., Andrews, R. E., Mandal, A., Chantry, A. D., Lawson, M. A., Andersen, T., Jimenez-Andrade, J. M. & Heegaard, Anne-Marie, 2022, In: Clinical Lymphoma, Myeloma & Leukemia. 22, Suppl., p. S108-S108 P-133.

      Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

    27. Published

      PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types

      Zafeiropoulos, H., Paragkamian, S., Ninidakis, S., Pavlopoulos, G. A., Jensen, Lars Juhl & Pafilis, E., 2022, In: Microorganisms. 10, 2, 22 p., 293.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 9931112