Jette Bornholdt Lange

Jette Bornholdt Lange

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    1 - 25 out of 35Page size: 25
    1. 2023
    2. Published

      Detecting host responses to microbial stimulation using primary epithelial organoids

      Lange, Jette Bornholdt, Müller, C. V., Nielsen, M. J., Strickertsson, J., Rago, D., Chen, Y., Maciag, Grzegorz Jerzy, Skov, Jonathan, Wellejus, A., Schweiger, P. J., Hansen, Stine Lind, Broholm, C., Gögenur, Ismail, Maimets, Martti, Sloth, S., Hendel, J., Baker, A., Sandelin, Albin Gustav & Jensen, Kim Bak, 2023, In: Gut Microbes. 15, 2, 16 p., 2281012.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation

      Pikkupeura, Laura Maarit, Bardini Bressan, Raul, Guiu, J., Chen, Y., Maimets, Martti, Mayer, Daniela, Schweiger, P. J., Hansen, Stine Lind, Maciag, Grzegorz Jerzy, Larsen, Hjalte List, Lõhmussaar, Kadi, Pedersen, M. T., Teves, Joji Marie Yap, Lange, Jette Bornholdt, Benes, V., Sandelin, Albin Gustav & Jensen, Kim Bak, 2023, In: Science Advances. 9, 28, 16 p., eadf9460.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. 2022
    5. Published

      PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave

      Thieffry, A., López Márquez, Diego, Lange, Jette Bornholdt, Gholami Malekroudi, M., Bressendorff, Simon, Barghetti, A., Sandelin, Albin Gustav & Brodersen, Peter, 2022, In: The Plant Cell. 34, 7, 23 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

      Einarsson, H., Salvatore, Marco, Vaagenso, C., Alcaraz, N., Lange, Jette Bornholdt, Rennie, Sarah & Andersson, Robin, 2022, In: eLife. 2022, 36 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. 2021
    8. Published

      Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

      Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, Robin, Arakawa, T., Araki, M., Arbel, T., Lange, Jette Bornholdt, Boyd, M., Chen, Y., Coskun, M., Dalby, M., Ienasescu, H., Jørgensen, M., Kaczkowski, B., Kere, J., Li, K., Lilje, B., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Rennie, Sarah, Sandelin, Albin Gustav, Valen, E., Vitezic, M., Vitting-Seerup, K. & FANTOM Consortium, F. C., 2021, In: Nature Communications. 12, 18 p., 3297.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. 2020
    10. Published

      Personalized B cell response to the Lactobacillus rhamnosus GG probiotic in healthy human subjects: a randomized trial

      Lange, Jette Bornholdt, Chen, Y., Rago, Alfredo, Sloth, S., Hendel, J., Melsæther, C., Müller, C. V., Juul Nielsen, M., Strickertsson, J., Engelholm, Lars Henning, Vitting-Seerup, K., Jensen, Kim Bak, Baker, A. & Sandelin, Albin Gustav, 9 Nov 2020, In: Gut Microbes. 12, 1, p. 1-14 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways

      Thieffry, A., Vigh, Maria Louisa, Lange, Jette Bornholdt, Ivanov, M., Brodersen, Peter & Sandelin, Albin Gustav, 2020, In: The Plant Cell. 32, 6, p. 1845-1867 23 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Sinonasal cancer

      Husgafvel-Pursiainen, K., Carton, M., Luce, D., Wolff, H., Holmila, R., Schlünssen, V., Lange, Jette Bornholdt & Hansen, J., 2020, Occupational Cancers. Anttila, S. & Boffetta, P. (eds.). 2. ed. ed. Springer, p. 147-178 32 p.

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    13. 2019
    14. Published

      Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

      Thodberg, Malte, Thieffry, A., Lange, Jette Bornholdt, Boyd, M., Holmberg, Christian, Azad, A., Workman, C. T., Chen, Y., Ekwall, K., Nielsen, Olaf & Sandelin, Albin Gustav, 28 Feb 2019, In: Nucleic Acids Research. 47, 4, p. 1671-1691 21 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. 2018
    16. Published

      A new class of genic nuclear RNA species in Arabidopsis

      van Wonterghem, M., Thieffry, A., Boyd, M., Lange, Jette Bornholdt & Brodersen, Peter, 2018, In: FEBS Letters. 592, 4, p. 631-643 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies

      Boyd, M., Thodberg, M., Vitezic, M., Lange, J. B., Vitting-Seerup, K., Chen, Y., Coskun, M., Li, Y., Lo, B. Z. S., Klausen, P., Schweiger, P., Pedersen, A. G., Rapin, N. P. J-P., Skovgaard, K., Dahlgaard, K., Andersson, R., Terkelsen, T. B., Lilje, B., Troelsen, J. T., Petersen, A. M. & 7 others, Jensen, Kim Bak, Gögenur, Ismail, Thielsen, P., Seidelin, Jakob Benedict, Nielsen, Ole Haagen, Bjerrum, Jakob Tveiten & Sandelin, Albin Gustav, 2018, In: Nature Communications. 9, 19 p., 1661.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The RNA exosome contributes to gene expression regulation during stem cell differentiation

      Llinares, M. L., Karadoulama, Evdoxia, Chen, Y., Wojenski, L. A., Villafano, G. J., Lange, Jette Bornholdt, Andersson, Robin, Core, L., Sandelin, Albin Gustav & Jensen, T. H., 2018, In: Nucleic Acids Research. 46, 21, p. 11502-11513

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. 2017
    20. Published

      Identification of gene transcription start sites and enhancers responding to pulmonary carbon nanotube exposure in Vivo

      Lange, Jette Bornholdt, Saber, A. T., Lilje, B., Boyd, M., Jørgensen, M., Chen, Y., Vitezic, M., Jacobsen, N. R., Poulsen, S. S., Berthing, T., Bressendorff, Simon, Vitting-Seerup, K., Andersson, Robin, Hougaard, K. S., Yauk, C. L., Halappanavar, S., Wallin, E. H. R., Vogel, U. & Sandelin, Albin Gustav, 2017, In: A C S Nano. 11, 4, p. 3597-3613 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Relation between NOD2 genotype and changes in innate signaling in Crohn's disease on mRNA and miRNA levels

      Chen, Y., Salem, M., Boyd, M., Lange, Jette Bornholdt, Li, Yuan, Coskun, M., Seidelin, Jakob Benedict, Sandelin, Albin Gustav & Nielsen, Ole Haagen, 2017, In: npj Genomic Medicine. 2, 11 p., 3.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. 2016
    23. Published

      On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

      Ienasescu, H., Li, K., Andersson, Robin, Vitezic, M., Rennie, Sarah, Chen, Y., Vitting-Seerup, K., Lagoni, E., Boyd, M., Lange, Jette Bornholdt, de Hoon, M. J. L., Kawaji, H., Lassmann, T., FANTOM Consortium, F. C., Hayashizaki, Y., Forrest, A. R. R., Carninci, P. & Sandelin, Albin Gustav, 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 0, 10 p., baw144.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Regulating retrotransposon activity through the use of alternative transcription start sites

      Persson, J., Steglich, B., Smialowska, A., Boyd, M., Lange, Jette Bornholdt, Andersson, Robin, Schurra, C., Arcangioli, B., Sandelin, Albin Gustav, Nielsen, Olaf & Ekwall, K., 2016, In: E M B O Reports. 17, 5, p. 753-768 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      The adipose transcriptional response to insulin is determined by obesity, not insulin sensitivity

      Rydén, M., Hrydziuszko, O., Mileti, E., Raman, A., Lange, Jette Bornholdt, Boyd, M., Toft, E., Qvist, V., Näslund, E., Thorell, A., Andersson, D. P., Dahlman, I., Gao, H., Sandelin, Albin Gustav, Daub, C. O. & Arner, P., 2016, In: Cell Reports. 16, 9, p. 2317-2326 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. 2014
    27. Published

      An atlas of active enhancers across human cell types and tissues

      Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Lange, J. B., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 30 others, Jørgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., Mueller, F., Forrest, A. R. R., Carninci, P., Rehli, M. & Sandelin, Albin Gustav, 2014, In: Nature. 507, 7493, p. 455-461 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2

      Boyd, M., Coskun, M., Lilje, B., Andersson, Robin, Hoof, I., Lange, Jette Bornholdt, Dahlgaard, K., Olsen, Jørgen, Vitezic, M., Bjerrum, Jakob Tveiten , Seidelin, Jakob Benedict, Nielsen, Ole Haagen, Troelsen, J. & Sandelin, Albin Gustav, 2014, In: D N A Research. 21, 6, p. 569-583 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Nuclear stability and transcriptional directionality separate functionally distinct RNA species

      Andersson, Robin, Refsing Andersen, P., Valen, E., Core, L. J., Lange, Jette Bornholdt, Boyd, M., Jensen, T. H. & Sandelin, Albin Gustav, 2014, In: Nature Communications. 5, 10 p., 5336.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. 2013
    31. Published

      Hepatocyte growth factor activator inhibitor-2 prevents shedding of matriptase

      Larsen, B. R., Steffensen, S. D. R., Nielsen, N. V. L., Friis, S., Godiksen, S., Lange, Jette Bornholdt, Soendergaard, C., Nonboe, Annika Weile, Andersen, M. N., Poulsen, Steen Seier, Szabo, R., Bugge, T. H., Lin, C., Skovbjerg, H., Jensen, J. K. & Vogel, Lotte, 1 Apr 2013, In: Experimental Cell Research. 319, 6, p. 918-929 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. Published

      Detection of Active Matriptase using a Biotinylated Chloromethyl Ketone Peptide

      Godiksen, S., Soendergaard, C., Friis, S., Jensen, J. K., Lange, Jette Bornholdt, Sales, K. U., Huang, M., Bugge, T. H. & Vogel, Lotte, 2013, In: P L o S One. 8, 10, 10 p., e77146.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Published

      Molecular constituents of the extracellular matrix in rat liver mounting a hepatic progenitor cell response for tissue repair

      Vestentoft, P. S., Jelnes, P., Andersen, Jesper Bøje, Tran, T. A. T., Jørgensen, T., Rasmussen, M., Lange, Jette Bornholdt, Grøvdal, L. M., Jensen, C. H., Vogel, Lotte, Thorgeirsson, S. S. & Bisgaard, Hanne Cathrine, 2013, In: Fibrogenesis & Tissue Repair. 6, 1, 15 p., 21.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality

      Ntini, E., Järvelin, A. I., Lange, Jette Bornholdt, Chen, Y., Boyd, M., Jørgensen, M., Andersson, Robin, Hoof, I., Schein, A., Andersen, P. R., Andersen, P. K., Preker, P., Valen, E., Zhao, X., Pelechano, V., Steinmetz, L. M., Sandelin, Albin Gustav & Jensen, T. H., 2013, In: Nature Structural and Molecular Biology. 20, p. 923-928 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. 2011
    36. Published

      Expression profile of the N-myc Downstream Regulated Gene 2 (NDRG2) in human cancers with focus on breast cancer

      Lorentzen, A. B., Lewinsky, R., Lange, Jette Bornholdt, Vogel, Lotte & Mitchelmore, C., 1 Jan 2011, In: BMC Cancer. 11, p. 14

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 33667728