Jan Gorodkin

Jan Gorodkin

Professor

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    1. Published

      CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters

      Alkan, F., Wenzel, Anne, Anthon, Christian, Havgaard, Jakob Hull & Gorodkin, Jan, 2018, In: Genome Biology. 19, 13 p., 177.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets

      Alkan, F., Wenzel, Anne, Palasca, Oana, Kerpedjiev, P., Rudebeck, A. F., Stadler, P. F., Hofacker, I. L. & Gorodkin, Jan, 2017, In: Nucleic Acids Research. 45, 8, 13 p., e60.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing

      Alquezar Planas, D. E., Mourier, T., Bruhn, C. A. W., Hansen, Anders Johannes, Vitcetz, S. N., Mørk, S., Gorodkin, Jan, Nielsen, H. A., Guo, Y., Sethuraman, A., Paxinos, E. E., Shan, T., Delwart, E. L. & Nielsen, L. P., 3 Sep 2013, In: Scientific Reports. 3, 10 p., 2468.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      The tmRDB and SRPDB resources

      Andersen, E. S., Rosenblad, M. A., Larsen, N., Westergaard, Jesper Cairo, Burks, J., Wower, I. K., Wower, J., Gorodkin, Jan, Samuelsson, T. & Zwieb, C., 2006, In: Nucleic Acids Research. 34, p. D163-D168 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Semiautomated improvement of RNA alignments

      Andersen, E. S., Lind-Thomsen, A., Knudsen, B., Kristensen, S. E., Havgaard, Jakob Hull, Torarinsson, E., Larsen, N., Zwieb, C., Sestoft, P., Kjems, J. & Gorodkin, Jan, 2007, In: RNA: A publication of the RNA Society. 13, 11, p. 1850-1859 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Structured RNAs and synteny regions in the pig genome

      Anthon, Christian, Tafer, H., Havgaard, Jakob Hull, Thomsen, B., Hedegaard, J., Seemann, Ernst Stefan, Pundhir, Sachin, Kehr, S., Bartschat, S., Nielsen, M., Nielsen, R. O., Fredholm, Merete, Stadler, P. F. & Gorodkin, Jan, 2014, In: BMC Genomics. 15, 27 p., 459.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design

      Anthon, Christian, Corsi, G. I. & Gorodkin, Jan, 2022, In: Bioinformatics. 38, 24, p. 5437-5439 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Comparative RNA genomics

      Backofen, R., Gorodkin, Jan, Hofacker, I. L. & Stadler, P. F., 2018, Comparative Genomics: Methods and Protocols. Humana Press, Vol. 1704. p. 363-400 38 p. (Methods in Molecular Biology, Vol. 1704).

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    9. Published

      Production of human entorhinal stellate cell-like cells by forward programming shows an important role of Foxp1 in reprogramming

      Bergmann, T., Liu, Y., Skov, J., Mogus, L., Lee, J., Pfisterer, U., Handfield, L. F., Asenjo-Martinez, A., Lisa-Vargas, I., Seemann, S. E., Lee, J. T. H., Patikas, N., Kornum, B. R., Denham, M., Hyttel, P., Witter, M. P., Gorodkin, J., Pers, T. H., Hemberg, M., Khodosevich, K. & 1 others, Hall, Vanessa Jane, 2022, In: Frontiers in Cell and Developmental Biology. 10, 976549.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      The developing Entorhinal Cortex – a cellular map

      Bergmann, T. B., Liu, Y., Lee, J., Pfisterer, U. G., Asenjo Martinez, A., Seemann, Ernst Stefan, Pihl, M., Thomsen, Preben Dybdahl, Hyttel, P., witter, M., Khodosevich, Konstantin, Gorodkin, Jan, Pers, Tune H & Hall, Vanessa Jane, 2019.

      Research output: Contribution to conference › Conference abstract for conference › Research

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