Jakob Hull Havgaard
Associate Professor
Preclinical Disease Biology
Ridebanevej 9, 1870 Frederiksberg C
- 2005
- Published
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
Havgaard, Jakob Hull, Lyngsø, R. B., Stormo, G. D. & Gorodkin, Jan, 2005, In: Bioinformatics. 21, 9, p. 1815-1824 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search
Havgaard, Jakob Hull, Lyngsø, R. B. & Gorodkin, Jan, 2005, In: Nucleic Acids Research. 33, p. W650-W653 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
- Published
MicroRNA sequence motifs reveal asymmetry between the stem arms
Gorodkin, Jan, Havgaard, Jakob Hull, Ensterö, M., Sawera, M., Jensen, P., Öhman, M. & Fredholm, Merete, 2006, In: Computational Biology and Chemistry. 30, 4, p. 249-254 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
Torarinsson, E., Sawera, M., Havgaard, Jakob Hull, Fredholm, Merete & Gorodkin, Jan, 2006, In: Genome Research. 16, 7, p. 885-889 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
- Published
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
Havgaard, Jakob Hull, Torarinsson, E. & Gorodkin, Jan, 2007, In: PLoS Computational Biology. 3, 10, p. 1896-1908 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiple structural alignment and clustering of RNA sequences: sequence analysis
Torarinsson, E., Havgaard, Jakob Hull & Gorodkin, Jan, 2007, In: Bioinformatics. 23, 8, p. 926-32 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Gorodkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S., Dong, W. & 16 others, , 2007, In: Genome Biology. 8, R45, p. R45 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation
Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B. S., Madsen, L. B., Høj, A., Vingborg, R., Zahn, B., Wang, X., Wang, X., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T. & 5 others, , 2007, In: Bioinformatics. 23, 13, p. i387-91 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Semiautomated improvement of RNA alignments
Andersen, E. S., Lind-Thomsen, A., Knudsen, B., Kristensen, S. E., Havgaard, Jakob Hull, Torarinsson, E., Larsen, N., Zwieb, C., Sestoft, P., Kjems, J. & Gorodkin, Jan, 2007, In: RNA: A publication of the RNA Society. 13, 11, p. 1850-1859 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural alignment of RNA with FOLDALIGN
Havgaard, Jakob Hull, 2007, Frederiksberg: Center for Skov, Landskab og Planlægning/Københavns Universitet. 128 p.Research output: Book/Report › Ph.D. thesis › Research
ID: 4240647
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Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1257
downloads
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
879
downloads
Structured RNAs and synteny regions in the pig genome
Research output: Contribution to journal › Journal article › Research › peer-review
Published