Flemming Steen Jørgensen

Flemming Steen Jørgensen

Professor

ORCID: 0000-0001-8040-2998

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  1. Published

    Salt-bridge Swapping in the EXXERFXYY Motif of Proton Coupled Oligopeptide Transporters

    Aduri, N. G., Prabhala, B. K., Ernst, H. A., Jørgensen, Flemming Steen, Olsen, L. & Mirza, Osman Asghar, 2015, In: The Journal of Biological Chemistry. 290, 50, p. 29931-29940 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Molecular Dynamics Simulations Reveal the Proton:Peptide Coupling Mechanism in the Bacterial Proton-Coupled Oligopeptide Transporter YbgH

    Aduri, N. G., Montefiori, M., Khalil, R., Gajhede, Michael, Jørgensen, Flemming Steen & Mirza, Osman Asghar, 31 Jan 2019, In: ACS Omega. 4, 1, p. 2040-2046 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Structural analysis of CYP2C9 and CYP2C5 and an evaluation of commonly used molecular modeling techniques

    Afzelius, L., Raubacher, F., Karlén, A., Jørgensen, Flemming Steen, Andersson, T. B., Masimirembwa, C. M. & Zamora, I., 2004, In: Drug Metabolism and Disposition. 32, 11, p. 1218-29 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Homology building as a means to define antigenic epitopes on dihydrofolate reductase (DHFR) from Plasmodium falciparum

    Alifrangis, Michael, Christensen, I. T., Jørgensen, Flemming Steen, Rønn, A. M., Weng, J. E., Chen, M., Bygbjerg, Ib Christian, Sirawaraporn, W., Palarasah, Y. & Koch, C., 2004, In: Malaria Journal. 3, p. 16

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Solvent diversity in polymorph screening

    Allesø, M., van der Berg, Franciscus Winfried J, Cornett, Claus, Jørgensen, Flemming Steen, Halling-Sørensen, B., Lopez de Diego, H., Hovgaard, L., Aaltonen, J. & Rantanen, Jukka, 2008, In: Journal of Pharmaceutical Sciences. 97, 6, p. 2145-2159

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Mutational mapping and modeling of the binding site for (S)-citalopram in the human serotonin transporter

    Andersen, J., Olsen, L., Hansen, K. B., Taboureau, O., Jørgensen, Flemming Steen, Jørgensen, A. M., Bang-Andersen, B., Egebjerg, J., Strømgaard, Kristian & Kristensen, Anders Skov, 2010, In: Journal of Biological Chemistry. 285, 3, p. 2051-2063

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    In vitro evaluation of N-methyl amide tripeptidomimetics as substrates for the human intestinal di-/tri-peptide transporter hPEPT1

    Andersen, R., Nielsen, C. U., Begtrup, M., Jørgensen, Flemming Steen, Larsen, Birger Brodin, Frøkjær, Sven & Steffansen, B., 2006, In: European Journal of Pharmaceutical Sciences. 28, 4, p. 325-35 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Development of a QSAR model for binding of tripeptides and tripeptidomimetics to the human intestinal di-/tripeptide transporter hPEPT1

    Andersen, R., Jørgensen, Flemming Steen, Olsen, L., Våbenø, J., Thorn, K., Nielsen, C. U. & Steffansen, B., 2006, In: Pharmaceutical Research. 23, 3, p. 483-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Forudsigelser med hjælp fra det virtuelle rum

    Andersen, R., Steffansen, B., Jørgensen, Flemming Steen & Nielsen, C. U., 2005, In: Lægemiddelforskning. p. 24-25

    Research output: Contribution to journal › Journal article › Communication

  10. Published

    peri-Interaction, ortho-interaction, and barriers to internal rotation. A dynamic nuclear magnetic resonance and molecular mechanics investigation of 1,2-dineopentylbenzene and 1,8-dineopentylnaphthalene

    Anderson, J. E., Barkel, D. J. & Jørgensen, Flemming Steen, 1 Feb 1988, In: Journal of the Chemical Society. Perkin Transactions 2 (2001). 2, p. 199-202 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Conformational analysis of peri-interactions in napththalene derivatives. Ring inversion in CH2–X–CH2-bridged peri-naphthalenes

    Anderson, J. E. & Jørgensen, Flemming Steen, 1 Apr 1988, In: Journal of the Chemical Society. Perkin Transactions 2 (2001). 1988, 4, p. 469-471 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Setting the anomeric effect against steric effects in simple acyclic acetals. Non-anomeric non-classical conformations. An n.m.r. and molecular mechanics investigation

    Anderson, J. E., Heki, K., Hirota, M. & Jørgensen, Flemming Steen, 1987, In: Chemical communications (Cambridge, England). 1987, p. 554-555 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Determination of ring inversion barriers for 1H,3H-naphtho[1,8-cd]-pyran and its methyl substituted derivatives by molecular mechanics calculations and dynamic nuclear magnetic resonance spectroscopy

    Anderson, J. E. & Jørgensen, Flemming Steen, 1 Jan 1981, In: Journal of the Chemical Society, Perkin Transactions 2. 4, p. 741-746 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Ring inversion of CH2-X-CH2-bridged peri-naphthalenes. A dynamic n.m.r. study

    Anderson, J. E., Jørgensen, Flemming Steen & Thomsen, T., 1 Jan 1982, In: Journal of the Chemical Society, Chemical Communications. 6, p. 333-334 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Conservation of a helix-stabilizing dipole moment in the PP-fold family of regulatory peptides

    Bjørnholm, B., Jørgensen, Flemming Steen & Schwartz, Thue W., 1993, In: Biochemistry. 32, 12, p. 2954-9 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Promising Tools in Prostate Cancer Research: Selective Non-Steroidal Cytochrome P450 17A1 Inhibitors

    Bonomo, S., Hansen, C. H., Petrunak, E. M., Scott, E. E., Styrishave, Bjarne, Jørgensen, Flemming Steen & Olsen, L., 12 Jul 2016, In: Scientific Reports. 6, 11 p., 29468.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Mechanism of Cytochrome P450 17A1-Catalyzed Hydroxylase and Lyase Reactions

    Bonomo, S., Jørgensen, Flemming Steen & Olsen, L., 22 May 2017, In: Journal of Chemical Information and Modeling. 57, 5, p. 1123-1133 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Dissecting the Cytochrome P450 1A2- and 3A4-Mediated Metabolism of Aflatoxin B1 in Ligand and Protein Contributions

    Bonomo, S., Jørgensen, Flemming Steen & Olsen, L., 24 Feb 2017, In: Chemistry: A European Journal. 23, 12, p. 2884-2893 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Structural and stereochemical requirements for interactions with subtypes of central excitatory amino acid receptors

    Brehm, L., Christensen, I. T., Nielsen, Birgitte, Reinhardt, A., Ebert, B., Madsen, Ulf, Jørgensen, Flemming Steen, Hansen, J. J. & Krogsgaard-Larsen, Povl, 1990, Frontiers in Drug Research; Alfred Benzon Symposium 28. Jensen, B., Jørgensen, F. S. & Kofod, H. (eds.). Copenhagen: Munksgaard , p. 92-105 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  20. Published

    Identification of a gene on chromosome 12q22 uniquely overexpressed in chronic lymphocytic leukemia

    Buhl, A. M., Jurlander, J., Jørgensen, Flemming Steen, Ottesen, A. M., Cowland, J. B., Gjerdrum, L. M., Hansen, B. V. & Leffers, H., 2006, In: Blood. 107, 7, p. 2904-11 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Correlations between Core Photoionization Energies (EB1s) and Gas-Phase Basicity. A General Method for Determining Sites of Protonation and Intramolecular Ion Reorganization Energies

    Buschek, J. M., Jørgensen, Flemming Steen & Brown, R. S., 1 Jan 1982, In: Journal of the American Chemical Society. 104, 19, p. 5019-5025 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Towards an identification of the pyrethroid pharmacophore. A molecular modelling study of some pyrethroid esters

    Byberg, J. R., Jørgensen, Flemming Steen & Klemmensen, P. D., 1987, In: Journal of Computer - Aided Molecular Design. 1, 3, p. 181-95 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Substrate-enzyme interactions and catalytic mechanism in phospholipase C: a molecular modeling study using the GRID program

    Byberg, J. R., Jørgensen, Flemming Steen, Hansen, S. & Hough, E., 1992, In: Proteins: Structure, Function, and Bioinformatics. 12, 4, p. 331-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Conformational analysis and molecular modelling of a partial GABA(A) agonist and a glycine antagonist related to the GABA(A) agonist, THIP

    Byberg Buur, J. R., Hjeds, H., Krogsgaard-Larsen, Povl & Jørgensen, Flemming Steen, 1 Dec 1993, In: Drug Design and Discovery. 10, 3, p. 213-229 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Insights into regioselective metabolism of mefenamic acid by cytochrome P450 BM3 mutants through crystallography, docking, molecular dynamics, and free energy calculations

    Capoferri, L., Leth, R., Ter Haar, E., Mohanty, A. K., Grootenhuis, P. D. J., Vottero, E., Commandeur, J. M. N., Vermeulen, N. P. E., Jørgensen, Flemming Steen, Olsen, L. & Geerke, D. P., Mar 2016, In: Proteins: Structure, Function, and Bioinformatics. 84, 3, p. 383-96 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    3-mercaptopropanal

    Carlsen, L., Jørgensen, Flemming Steen, Egsgaard, H. & Nicolaisen, F. M., 1 Jan 1984, In: Journal of the Chemical Society, Perkin Transactions 2. 4, p. 609-613 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Molecular mechanics calculations of proteins. Comparison of different energy minimization strategies

    Christensen, I. T. & Jørgensen, Flemming Steen, 1997, In: Journal of Biomolecular Structure & Dynamics. 15, 3, p. 473-88 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Three-dimensional structures of human phospholipase A2 from pancreas and synovial fluid by model building

    Christensen, I. T., Jørgensen, Flemming Steen, Svensson, L. A. & Högberg, T., 1993, In: Drug Design and Discovery. 10, 2, p. 101-13 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Conformational analysis of six- and twelve-membered ring compounds by molecular dynamics

    Christensen, I. T. & Jørgensen, Flemming Steen, 1997, In: Journal of Computer - Aided Molecular Design. 11, 4, p. 385-94 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Primary structure and conformational analysis of peptide methionine-tyrosine, a peptide related to neuropeptide Y and peptide YY isolated from lamprey intestine

    Conlon, J. M., Bjørnholm, B., Jørgensen, Flemming Steen, Youson, J. H. & Schwartz, T. W., 1991, In: European Journal of Biochemistry. 199, 2, p. 293-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Number connection test and continuous reaction times in assessment of organic and metabolic encephalopathy: a comparative study

    Elsass, P., Christensen, S. E., Jørgensen, Flemming Steen, Mortensen, Erik Lykke & Vilstrup, H., Feb 1984, In: Acta Pharmacologica et Toxicologica. 54, 2, p. 115-9 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Structural analysis of Cytochrome P450 BM3 mutant M11 in complex with dithiothreitol

    Frydenvang, Karla Andrea, Verkade-Vreeker, M. C. A., Dohmen, F., Commandeur, J. N. M., Rafiq, M., Mirza, Osman Asghar, Jørgensen, Flemming Steen & Geerke, D. P., 2019, In: PLoS ONE. 14, 5, 15 p., e0217292.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Crystal and Molecular Structure of anti-Sesquinorbornene

    Gaihede, M., Jørgensen, Flemming Steen, Kopecky, K. R., Watson, W. H. & Kashyap, R. P., 1 Jan 1985, In: Journal of Organic Chemistry. 50, 22, p. 4395-4397 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Sulfur-Bridged pen-Naphthalenes: Synthesis, Conformational Analysis, and Photoelectron Spectroscopy of the Mono-, Di-, and Trisulfides of 1,8-Dimethylnaphthalene

    Guttenberger, H. G., Bestmann, H. J., Dickert, F. L., Jørgensen, Flemming Steen & Snyder, J. P., 1 Jan 1981, In: Journal of the American Chemical Society. 103, 1, p. 159-168 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Synthesis and antiangiogenic activity of N-alkylated levamisole derivatives

    Hansen, A. N., Bendiksen, C. D., Sylvest, L., Friis, T., Stærk, Dan, Jørgensen, Flemming Steen, Olsen, Christian Adam & Houen, G., 2012, In: P L o S One. 7, 9, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    AMPA receptor agonists: structural, conformational and stereochemical aspects

    Hansen, J., Jørgensen, Flemming Steen, Lund, Trine Meldgaard, Nielsen, Birgitte, Reinhardt, A., Breum, I., Brehm, L. & Krogsgaard-Larsen, Povl, 1992, Excitatory Amino Acid Receptors. Krogsgaard-Larsen, P. & Hansen, J. J. (eds.). Ellis Horwood: Chichester, 30 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    Prediction of pH-dependent aqueous solubility of druglike molecules

    Hansen, N. T., Kouskoumvekaki, I., Jørgensen, Flemming Steen, Brunak, Søren & Jónsdóttir, S. O., 2012, In: Journal of Chemical Information and Modeling. 46, 6, p. 2601-2609 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Cyclynes. Part 5. Pericyclynes: "exploded cycloalkanes" with unusual orbital interactions and conformational properties. MM2 and STO-3G calculations, x-ray crystal structures, photoelectron spectra, and electron transmission spectra

    Houk, K. N., Scott, L. T., Rondan, N. G., Spellmeyer, D. C., Reinhardt, G., Hyun, J. L., DeCicco, G. J., Weiss, R., Chen, M. H. M., Bass, L. S., Clardy, J., Jørgensen, Flemming Steen, Eaton, T. A., Sarkozi, V., Petit, C. M., Ng, L. & Jordan, K. D., 1985, In: Journal of the American Chemical Society. 107, 23, p. 6556-6562 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Update on protein structure prediction: Results of the 1995 IRBM workshop

    Hubbard, T., Tramontano, A., Barton, G., Jones, D., Sippl, M., Valencia, A., Lesk, A., Moult, J., Rost, B., Sander, C., Schneider, R., Lahm, A., Leplae, R., Buta, C., Eisenstein, M., Fjellstrom, O., Floeckner, H., Grossmann, JG., Hansen, J., Citterich, MH. & 12 others, Jørgensen, Flemming Steen, MarchlerBauer, A., Osuna, J., Park, J., Reinhardt, A., dePouplana, L., RojoDominguez, A., Saudek, V., Sinclair, J., Sturrock, S., Venclovas, C. & Vinals, C., 1996, In: Folding and Design. 1, 3, p. R55-R63

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Computational prediction of solubilizers' effect on partitioning

    Høst, J., Christensen, I. T., Jørgensen, Flemming Steen, Frøkjær, Sven & Hovgaard, L., 2007, In: Internation Journal of Pharmaceutics. 329, 1-2, p. 46-52

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Conformational analysis of the fungicide fenpropimorph by molecular mechanics calculations and NMR spectroscopy

    Kastrup, Jette Sandholm Jensen, Jørgensen, Flemming Steen, Klemmensen, P. D., Hacksell, U. & Petersson, I., 1992, In: Journal of Pesticide Science. 36, p. 309-318 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Study on the binding of Thioflavin T to ß-sheet-rich and non-ß-sheet cavities

    Jensen, M. G., Olsen, L., van de Weert, Marco, Flink, J. M., Frøkjær, Sven & Jørgensen, Flemming Steen, 2007, In: Journal of Structural Biology. 158, 3, p. 358-369

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Biased cytochrome P450-mediated metabolism via small-molecule ligands binding P450 oxidoreductase

    Jensen, S. B., Thodberg, S., Parween, S., Moses, M. E., Hansen, Cecilie Ida Cetti, Thomsen, J., Sletfjerding, M. B., Knudsen, C., Del Giudice, R., Lund, P. M., Castaño, P. R., Bustamante, Y. G., Velazquez, M. N. R., Jørgensen, Flemming Steen, Pandey, A. V., Laursen, Tomas, Møller, Birger Lindberg & Hatzakis, Nikos, 2021, In: Nature Communications. 12, 1, 14 p., 2260.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Is the unique benzodiazepine structure interacting with CYP enzymes to affect steroid synthesis in vitro?

    Johannsen, Malene Louise, Munkboel, C. H., Jørgensen, Flemming Steen & Styrishave, Bjarne, 2021, In: Journal of Steroid Biochemistry and Molecular Biology. 205, 10 p., 105765.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The Electronic Structure of β-Thioxoketones. A Photoelectron Spectroscopic Study of the Enol-Enethiol Tautomerism of Thioacetylacetone and Related Compounds

    Jørgensen, Flemming Steen, Carlsen, L. & Duus, F., 1 Jan 1981, In: Journal of the American Chemical Society. 103, 6, p. 1350-1353 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates

    Jónsdóttir, S. O., Jørgensen, Flemming Steen & Brunak, Søren, 2005, In: Bioinformatics. 21, 10, p. 2145-60 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Cyclic Acetals. Structural Analysis of 1,3‐Dioxepine and Related Compounds

    Jørgensen, Flemming Steen, Gajhede, Michael & Frei, B., 1 Jan 1985, In: Helvetica Chimica Acta. 68, 8, p. 2148-2157 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Polyethers. Structural analysis of the 1,4,5,8-tetraoxadecalins and 2,2'-bis(1,3-dioxolane) by photoelectron spectroscopy, molecular mechanics and molecular orbital calculations

    Jørgensen, Flemming Steen, Nørskov-Lauritsen, L., Jensen, R. B. & Sshroll, G., 1 Jan 1981, In: Tetrahedron. 37, 21, p. 3671-3679 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Search for a trans-Disulfide: Structural Analysis of Di-tert-adamantyl Disulfide by Photoelectron Spectroscopy, Derivation of σI (t-Ad), and Molecular Mechanics Calculations for Related Bulky Disulfides

    Jørgensen, Flemming Steen & Snyder, J. P., 1 Jan 1980, In: Journal of Organic Chemistry. 45, 6, p. 1015-1020 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    1,2‐Oxathiolane – A Photoelectron Spectroscopic Study

    Jørgensen, Flemming Steen & Carlsen, L., 1 Jan 1983, In: Chemische Berichte. 116, 6, p. 2374-2377 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 1302104