Chuna Ram Choudhary

Chuna Ram Choudhary

Professor, Group Leader, Professor

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    ORCID: 0000-0002-9863-433X

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    1. Published

      p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage

      Borisova, M. E., Voigt, A., Tollenaere, M. A. X., Sahu, S. K., Juretschke, T., Kreim, N., Mailand, Niels, Choudhary, Chunaram, Bekker-Jensen, Simon Holst, Akutsu, M., Wagner, S. A. & Beli, P., 1 Dec 2018, In: Nature Communications. 9, p. 1-16 16 p., 1017.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      lncRNA Panct1 Maintains Mouse Embryonic Stem Cell Identity by Regulating TOBF1 Recruitment to Oct-Sox Sequences in Early G1

      Chakraborty, D., Paszkowski-Rogacz, M., Berger, N., Ding, L., Mircetic, J., Fu, J., Iesmantavicius, V., Choudhary, Chunaram, Anastassiadis, K., Stewart, A. F. & Buchholz, F., 12 Dec 2017, In: Cell Reports. 21, 11, p. 3012-3021 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Ubiquitin-SUMO Circuitry Controls Activated Fanconi Anemia ID Complex Dosage in Response to DNA Damage

      Gibbs-Seymour, I., Oka, Y., Rajendra, E., Weinert, B. T., Passmore, L. A., Patel, K. J., Olsen, Jesper Velgaard, Choudhary, Chunaram, Bekker-Jensen, Simon Holst & Mailand, Niels, Jan 2015, In: Molecular Cell. 57, 1, p. 150-64 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells

      Oka, Y., Varmark, H., Vitting-Seerup, K., Beli, P., Waage, J. E., Hakobyan, A., Mistrik, M., Choudhary, Chunaram, Rohde, M., Bekker-Jensen, Simon Holst & Mailand, Niels, 2014, In: E M B O Reports. 15, 9, p. 956-964 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β

      J D'Souza, R. C., Knittle, A. M., Nagaraj, N., van Dinther, M., Choudhary, Chunaram, Ten Dijke, P., Mann, Matthias & Sharma, K., Jul 2014, In: Science Signaling. 7, 335, p. rs5 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome

      Weinert, B. T., Narita, Takeo, Satpathy, S., Srinivasan, B., Hansen, B. K., Schölz, C., Hamilton, W. B., Zucconi, B. E., Wang, W. W., Liu, W. R., Brickman, Joshua Mark, Kesicki, E. A., Lai, A., Bromberg, K. D., Cole, P. A. & Choudhary, Chunaram, 2018, In: Cell. 174, 1, p. 231-244.e12 27 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      The growing landscape of lysine acetylation links metabolism and cell signalling

      Choudhary, Chunaram, Weinert, B. T., Nishida, Y., Verdin, E. & Mann, Matthias, 23 Jul 2014, In: Nature Reviews. Molecular Cell Biology. 15, 8, p. 536-50 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    8. Published

      The Spindle Assembly Checkpoint Is Not Essential for Viability of Human Cells with Genetically Lowered APC/C Activity

      Wild, T., Larsen, Marie Sofie Yoo, Narita, Takeo, Schou, J., Nilsson, Jakob & Choudhary, Chunaram, 1 Mar 2016, In: Cell Reports. 14, 8, p. 1829-40 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      TOBF1 modulates mouse embryonic stem cell fate through regulating alternative splicing of pluripotency genes

      Aich, M., Ansari, A. H., Ding, Li, Iesmantavicius, V., Paul, D., Choudhary, Chunaram, Maiti, S., Buchholz, F. & Chakraborty, D., 2023, In: Cell Reports. 42, 10, 22 p., 113177.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass

      Povlsen, L. K., Beli, P., Wagner, S. A., Poulsen, S. L., Sylvestersen, K. B., Poulsen, J. W., Nielsen, Michael Lund, Bekker-Jensen, Simon Holst, Mailand, Niels & Choudhary, Chunaram, Oct 2012, In: Nature Cell Biology. 14, 10, p. 1089-98 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation

      Satpathy, S., Wagner, S. A., Beli, P., Gupta, R., Kristiansen, T. A., Malinova, D., Francavilla, C., Tolar, P., Bishop, G. A., Hostager, B. S. & Choudhary, Chunaram, 2015, In: Molecular Systems Biology. 11, 6, 810.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells

      Ding, L., Paszkowski-Rogacz, M., Winzi, M., Chakraborty, D., Theis, M., Singh, S., Ciotta, G., Poser, I., Roguev, A., Chu, W. K., Choudhary, Chunaram, Mann, Matthias, Stewart, A. F., Krogan, N. & Buchholz, F., 26 Aug 2015, In: Cell Systems. 1, 2, p. 141-151 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry

      Jungmichel, S., Sylvestersen, K. B., Choudhary, Chunaram, Nguyen, S., Mann, Matthias & Nielsen, Michael Lund, 13 Feb 2014, In: Cell Reports. 6, 3, p. 578-91 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Sequencing of the First Draft of the Human Acetylome

      Choudhary, Chunaram & Mann, Matthias, 2020, In: Clinical Chemistry. 66, 6, p. 852-853 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      STK3 is a therapeutic target for a subset of acute myeloid leukemias

      Camgoz, A., Paszkowski-Rogacz, M., Satpathy, S., Wermke, M., Hamann, M. V., von Bonin, M., Choudhary, Chunaram, Knapp, S. & Buchholz, F., 2018, In: OncoTarget. 9, 39, p. 25458-25473 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes

      Wagner, S. A., Satpathy, S., Beli, P. & Choudhary, Chunaram, 1 Sep 2016, In: E M B O Journal. 35, 17, p. 1868-1884

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      SOCS1 cooperates with FLT3-ITD in the development of myeloproliferative disease by promoting the escape from external cytokine control

      Reddy, P. N. G., Serve, H., Brandts, C. H., Sargin, B., Choudhary, Chunaram, Müller-Tidow, C., Berdel, W. E., Stein, S. & Grez, M., 23 Aug 2012, In: Blood. 120, 8, p. 1691-1702 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      SIK2 orchestrates actin-dependent host response upon Salmonella infection

      Hahn, M., Covarrubias-Pinto, A., Herhaus, L., Satpathy, S., Klann, K., Boyle, K. B., Münch, C., Rajalingam, K., Randow, F., Choudhary, Chunaram & Dikic, I., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 19, 10 p., e2024144118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Redox-sensitive alteration of replisome architecture safeguards genome integrity

      Somyajit, K., Gupta, R., Sedlackova, H., Neelsen, K. J., Ochs, Fena, Rask, M., Choudhary, Chunaram & Lukas, Jiri, 10 Nov 2017, In: Science. 358, 6364, p. 797-802 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      RNF111/Arkadia is a SUMO-targeted ubiquitin ligase that facilitates the DNA damage response

      Poulsen, S. L., Hansen, R. K., Wagner, S. A., van Cuijk, L., van Belle, G. J., Streicher, W., Wikström, M., Choudhary, Chunaram, Houtsmuller, A. B., Marteijn, J. A., Bekker-Jensen, Simon Holst & Mailand, Niels, 10 Jun 2013, In: Journal of Cell Biology. 201, 6, p. 797-807 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

      Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T., Olsen, Jesper Velgaard, Baskcomb, L., Mann, Matthias, Jackson, S. P. & Choudhary, Chunaram, 2012, In: Molecular Cell. 46, 2, p. 212-25 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3

      Sol, E. M., Wagner, S. A., Weinert, B. T., Kumar, A., Kim, H., Deng, C. & Choudhary, Chunaram, 7 Dec 2012, In: PloS one. 7, 12, p. e50545

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Proteomic exploration of lysine acetylation signaling

      Choudhary, Chunaram, 2019, In: Molecular & Cellular Proteomics. 18, 8, p. S25 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    24. Published

      Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns

      Lundby, Alicia, Hansen, K. L., Weinert, B. T., Breinholt Bekker-Jensen, D., Secher, A., Skovgaard, T., Kelstrup, C., Dmytriyev, A., Choudhary, Chunaram, Lundby, C. & Olsen, Jesper Velgaard, 30 Aug 2012, In: Cell Reports. 2, 2, p. 419-431 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Proteomic analyses reveal divergent ubiquitylation site patterns in murinetissues

      Wagner, S. A., Beli, P., Weinert, B. T., Schölz, C. F., Kelstrup, C. D., Young, C., Nielsen, Michael Lund, Olsen, Jesper Velgaard, Brakebusch, Cord Herbert & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

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