Birgitte Regenberg

Birgitte Regenberg

Professor

ORCID: 0000-0003-4996-7012

Publication year:
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1 - 50 out of 59Page size: 50
  1. 2023
  2. Published

    Circular and Circulating DNA in Inflammatory Bowel Disease: From Pathogenesis to Potential Molecular Therapies

    Di Vincenzo, F., Yadid, Y., Petito, V., Emoli, V., Masi, L., Gerovska, D., Araúzo-Bravo, M. J., Gasbarrini, A., Regenberg, Birgitte & Scaldaferri, F., 2023, In: Cells. 12, 15, 29 p., 1953.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Did circular DNA shape the evolution of mammalian genomes?

    Holt, Sylvester, Arrey Tané, Gerard & Regenberg, Birgitte, 2023, In: Trends in Biochemical Sciences. 48, 4, 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Methods for the purification and detection of single nucleotide KRAS mutations on extrachromosomal circular DNA in human plasma

    Hansen, Lasse Bøllehuus, Jakobsen, S. F., Zole, Egija, Noer, Julie Boertmann, Fang, L. T., Alizadeh, S., Johansen, Julia Sidenius, Mohiyuddin, M. & Regenberg, Birgitte, 2023, In: Cancer Medicine. 12, 17, p. 17679-17691 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Variation of extrachromosomal circular DNA in cancer cell lines

    dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. 2022
  7. Published

    A unifying model for extrachromosomal circular DNA load in eukaryotic cells

    Arrey Tané, Gerard, Keating, S. T. & Regenberg, Birgitte, 2022, In: Seminars in Cell and Developmental Biology. 128, p. 40-50 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences

    Wanchai, V., Jenjaroenpun, P., Leangapichart, T., Arrey Tané, Gerard, Burnham, C. M., Tümmler, M. C., Delgado-Calle, J., Regenberg, Birgitte & Nookaew, I., 2022, In: Briefings in Bioinformatics. 23, 6, 11 p., bbac422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs

    Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A., Bolund, L., Lin, L. & 7 others, Jin, X., Yang, H., Zhang, X., Yin, T., Regenberg, Birgitte, He, F. & Luo, Y., 2022, In: Clinical and Translational Medicine. 12, 4, 16 p., e817.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Circular DNA in the human germline and its association with recombination

    Henriksen, Rasmus Henrik Amund, Jenjaroenpun, P., Sjøstrøm, I. B., Jensen, Kristian HR, Prada Luengo, Inigo, Wongsurawat, T., Nookaew, I. & Regenberg, Birgitte, 2022, In: Molecular Cell. 82, 1, p. 209-217.e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Extrachromosomal circular DNA in cancer: history, current knowledge, and methods

    Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  12. Published

    Targeted removal of mitochondrial DNA from mouse and human extrachromosomal circular DNA with CRISPR-Cas9

    Feng, Weijia, Arrey Tané, Gerard, Zole, Egija, Iv, W., Liang, Xue, Han, Peng, Mohiyuddin, M., Pilegaard, Henriette & Regenberg, Birgitte, 2022, In: Computational and Structural Biotechnology Journal. 20, p. 3059-3067 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. 2021
  14. Published

    Isolation, characterization, and genome assembly of Barnettozyma botsteinii sp. nov. and novel strains of Kurtzmaniella quercitrusa isolated from the intestinal tract of the termite Macrotermes bellicosus

    Arrey Tané, Gerard, Li, G., Murphy, Rob, Guimaraes, L., Alizadeh, S., Poulsen, Michael & Regenberg, Birgitte, 2021, In: G3: Genes, Genomes, Genetics. 11, 12, 13 p., jkab342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. 2020
  16. Published

    Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome

    Møller, H. D., Ramos Madrigal, Jazmin, Prada Luengo, Inigo, Gilbert, M Thomas P & Regenberg, Birgitte, 2020, In: Genome Biology and Evolution. 12, 2, p. 3762-3777 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae

    Prada Luengo, Inigo, Møller, H. D., Henriksen, Rasmus Henrik Amund, Gao, Q., Larsen, C. E., Alizadeh, S., Maretty, L., Houseley, J. & Regenberg, Birgitte, 2020, In: Nucleic Acids Research. 48, 14, p. 7883-7898 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    What Is Extrachromosomal Circular DNA and What Does It Do?

    Chiu, R. W. K., Dutta, A., Hensson, A. G., Lo, Y. M. D., Mischel, P. & Regenberg, Birgitte, 2020, In: Clinical Chemistry. 66, 6, p. 754-759

    Research output: Contribution to journal › Editorial › Research › peer-review

  19. 2019
  20. Published

    Lifelong physical activity is associated with promoter hypomethylation of genes involved in metabolism, myogenesis, contractile properties and oxidative stress resistance in aged human skeletal muscle

    Sailani, M. R., Halling, J. F., Møller, H. D., Lee, H., Plomgaard, Peter Stendahl, Pilegaard, Henriette, Snyder, M. P. & Regenberg, Birgitte, 2019, In: Scientific Reports. 9, p. 1-11 3272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Multicellular group formation in Saccharomyces cerevisiae

    Fisher, Roberta May & Regenberg, Birgitte, 2019, In: Proceedings. Biological sciences. 286, 1910, 7 p., 20191098.

    Research output: Contribution to journal › Review › Research › peer-review

  22. Published

    RNAi as a Tool to Study Virulence in the Pathogenic Yeast Candida glabrata

    Ishchuku, O. P., Ahmad, K. M., Koruza, K., Bojanovic, K., Sprenger, M., Kasper, L., Brunke, S., Hube, B., Säll, T., Hellmark, T., Gullstrand, B., Brion, C., Freel, K., Schacherer, J., Regenberg, Birgitte, Knechtts, W. & Piskur, J., 2019, In: Frontiers in Microbiology. 10, 17 p., 1679.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads

    Prada Luengo, Inigo, Krogh, Anders, Sørensen, L. M. & Regenberg, Birgitte, 2019, In: BMC Bioinformatics. 20, 9 p., 663.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    To Be or Not to Be: Circular RNAs or mRNAs From Circular DNAs?

    Iparraguirre, L., Prada Luengo, Inigo, Regenberg, Birgitte & Otaegui, D., 2019, In: Frontiers in Genetics. 10, 6 p., 940.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. 2018
  26. Published

    Circular DNA elements of chromosomal origin are common in healthy human somatic tissue

    Møller, H. D., Mohiyuddin, M., Prada Luengo, Inigo, Sailani, M. R., Halling, J. F., Plomgaard, Peter Stendahl, Maretty, L., Hansen, Anders Johannes, Snyder, M. P., Pilegaard, Henriette, Lam, H. Y. K. & Regenberg, Birgitte, 1 Dec 2018, In: Nature Communications. 9, 12 p., 1069.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    CRISPR-C: circularization of genes and chromosome by CRISPR in human cells

    Møller, H. D., Lin, L., Xiang, X., Petersen, T. S., Huang, J., Yang, L., Kjeldsen, E., Jensen, U. B., Zhang, X., Liu, X., Xu, X., Wang, J., Yang, H., Church, G. M., Bolund, L., Regenberg, Birgitte & Luo, Y., 2018, In: Nucleic Acids Research. 46, 22, p. 1-13 e131.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Regulation of apoptosis and autophagy in mouse and human skeletal muscle with aging and lifelong exercise training

    Dethlefsen, M. M., Halling, J. F., Møller, H. D., Plomgaard, Peter Stendahl, Regenberg, Birgitte, Jørgensen, Stine Ringholm & Pilegaard, Henriette, 2018, In: Experimental Gerontology. 111, p. 141-153

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. 2017
  30. Published

    Division of labour in the yeast: Saccharomyces cerevisiae

    Wloch-Salamon, D. M., Fisher, Roberta May & Regenberg, Birgitte, Oct 2017, In: Yeast. 34, 10, p. 399-406 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Persistence and drug tolerance in pathogenic yeast

    Bojsen, R. K., Regenberg, Birgitte & Folkesson, A., Feb 2017, In: Current Genetics. 63, 1, p. 19-22 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  32. 2016
  33. Published

    A common mechanism involving the TORC1 pathway can lead to amphotericin B-persistence in biofilm and planktonic Saccharomyces cerevisiae populations populations

    Bojsen, R. K., Regenberg, Birgitte, Gresham, D. & Folkesson, A., 2016, In: Scientific Reports. 6, 10 p., 21874 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Clonal yeast biofilms can reap competitive advantages through cell differentiation without being obligatorily multicellular

    Regenberg, Birgitte, Hanghøj, Kristian Ebbesen, Andersen, K. S. & Boomsma, Jacobus J., 2016, In: Royal Society of London. Proceedings B. Biological Sciences. 283, 1842, 8 p., 20161303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Formation of extrachromosomal circular DNA from long terminal repeats of retrotransposons in Saccharomyces cerevisiae

    Møller, H. D., Larsen, C. E., Parsons, L., Hansen, Anders Johannes, Regenberg, Birgitte & Mourier, T., 2016, In: G3: Genes, Genomes, Genetics. 6, 2, p. 453-462 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Genome-wide purification of extrachromosomal circular DNA from eukaryotic cells

    Møller, H. D., Bojsen, R. K., Tachibana, C., Parsons, L., Botstein, D. & Regenberg, Birgitte, 2016, In: Journal of Visualized Experiments. 110, 8 p., e54239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. 2015
  38. Published

    Antifungal properties of peptidomimetics with an arginine-[β-(2,5,7-tri-tert-butylindol-3-yl)alanine]-arginine motif against Saccharomyces cerevisiae and Zygosaccharomyces bailii

    Larsen, C. E., Larsen, C. J., Franzyk, Henrik & Regenberg, Birgitte, 2015, In: F E M S Yeast Research. 15, 3, 8 p., fov011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Extrachromosomal circular DNA is common in yeast

    Møller, H. D., Parsons, L., Jørgensen, T. S., Botstein, D. & Regenberg, Birgitte, 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 24, p. E3114–E3122 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. 2014
  41. Published

    Saccharomyces cerevisiae biofilm tolerance towards systemic antifungals depends on growth phase

    Bojsen, R., Regenberg, Birgitte & Folkesson, A., 2014, In: B M C Microbiology. 14, 305, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genetic basis for Saccharomyces cerevisiae biofilm in liquid medium

    Andersen, K. S., Bojsen, R. K., Sørensen, L. G. R., Weiss Nielsen, M., Lisby, Michael, Folkesson, A. & Regenberg, Birgitte, 2014, In: G3: Genes, Genomes, Genetics (Bethesda). 4, 9, p. 1671-1680 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. 2013
  44. Published

    A model for generating several adaptive phenotypes from a single genetic event: Saccharomyces cerevisiae GAP1 as a potential bet-hedging switch

    Møller, H. D., Andersen, K. S. & Regenberg, Birgitte, 2013, In: Communicative & Integrative Biology. 6, 3, p. 1-4 4 p., e23933.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The synthetic amphipathic peptidomimetic LTX109 is a potent fungicide that disturbs plasma membrane integrity in a sphingolipid dependent manner

    Bojsen, R. K., Torbensen, R., Larsen, C. E., Folkesson, A. & Regenberg, Birgitte, 2013, In: P L o S One. 8, 7, 8 p., e69483.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. 2012
  47. Published

    Saccharomyces cerevisiae - a model to uncover molecular mechanisms for yeast biofilm biology

    Bojsen, R. K., Andersen, K. S. & Regenberg, Birgitte, 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 169-182 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Amino acid transporter genes are essential for FLO11-dependent and FLO11-independent biofilm formation and invasive growth in Saccharomyces cerevisiae

    Torbensen, R., Møller, H. D., Gresham, D., Alizadeh, S., Ochmann, D., Boles, E. & Regenberg, Birgitte, 2012, In: P L o S One. 7, 7, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. 2011
  50. Published

    Pseudomonas aeruginosa and Saccharomyces cerevisiae biofilm in flow cells

    Weiss Nielsen, M., Sternberg, C., Molin, S. & Regenberg, Birgitte, 2011, In: Journal of Visualized Experiments. 47, p. pii:2383

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Advanced microscopy of microbial cells

    Haagensen, J. A. J., Regenberg, Birgitte & Sternberg, C., 2011, In: Advances in Biochemical Engineering. Biotechnology. 124, p. 21-54 34 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. 2010
  53. Published

    Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

    Gresham, D., Usaite, R., Germann, S. M., Lisby, Michael, Botstein, D. & Regenberg, Birgitte, 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 43, p. 18551-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. 2008

  55. The roles of galactitol, galactose-1-phosphate, and phosphoglucomutase in galactose-induced toxicity in Saccharomyces cerevisiae

    de Jongh, W. A., Bro, C., Ostergaard, S., Regenberg, Birgitte & Olsson, L., 2008, In: Biotechnology and Bioengineering (Print). 101, 2, p. 317-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. 2006
  57. Published

    Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation

    Usaite, R., Patil, K. R., Grotkjær, T., Nielsen, J. & Regenberg, Birgitte, 1 Sep 2006, In: Applied and Environmental Microbiology. 72, 9, p. 6194-6203 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Deletion of RTS1, Encoding a Regulatory Subunit of Protein Phosphatase 2A, Results in Constitutive Amino Acid Signaling via Increased Stp1p Processing

    Eckert-Boulet, N., Larsson, K., Wu, B., Poulsen, P., Regenberg, Birgitte, Nielsen, J. & Kielland-Brandt, M. C., 2006, In: Eukaryotic Cell. 5, 1, p. 174-179 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

    Regenberg, Birgitte, Grotkjaer, T., Winther, Ole, Fausbøll, A., Akesson, M., Bro, C., Hansen, L. K., Brunak, Søren & Nielsen, Jens Bo, 2006, In: Genome Biology (Online Edition). 7, 11, p. R107

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production

    Bro, C., Regenberg, Birgitte, Förster, J. & Nielsen, J., 2006, In: Metabolic Engineering. 8, 2, p. 102-111 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm

    Grotkjær, T., Winther, Ole, Regenberg, Birgitte, Nielsen, J. & Hansen, L. K., 2006, In: Bioinformatics. 22, 1, p. 58-67 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. 2005

  63. Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: Example of transcript analysis as a tool in inverse metabolic engineering

    Bro, C., Knudsen, S., Regenberg, Birgitte, Olsson, L. & Nielsen, J., 1 Nov 2005, In: Applied and Environmental Microbiology. 71, 11, p. 6465-6472 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae

    Eckert-Boulet, N., Regenberg, Birgitte & Nielsen, J., 1 Mar 2005, In: Current Genetics. 47, 3, p. 139-149 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. 2004
  66. Published

    Use of laminar flow patterning for miniaturised biochemical assays

    Regenberg, Birgitte, Krühne, U., Beyer, M., Pedersen, L. H., Simón, M., Thomas, O. R. T., Nielsen, J. & Ahl, T., Dec 2004, In: Lab on a Chip. 4, 6, p. 654-657 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp 1 p and Stp2p

    Eckert-Boulet, N., Nielsen, P. S., Friis, Carsten, Moreira dos Santos, M., Nielsen, J., Kielland-Brandt, M. C. & Regenberg, Birgitte, 1 Jun 2004, In: Yeast. 21, 8, p. 635-648 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Genome-wide transcriptional response of a Saccharomyces cerevisiae strain with an altered redox metabolism

    Bro, C., Regenberg, Birgitte & Nielsen, J., 2004, In: Biotechnology and Bioengineering. 85, 3, p. 269-276 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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