Kristian Ebbesen Hanghøj
Guest researcher, Guest Researcher
- 2024
- Published
African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival
Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, , 2024, In: Nature Communications. 15, 1, 15 p., 172.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Giraffe lineages are shaped by major ancient admixture events
Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, , 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations
Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, , 2024, In: Nature Communications. 15, 1, 16 p., 2921.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the muskox' resilience in the near absence of genetic variation
Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, , 2024, In: Molecular Ecology. 33, 2, 25 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo
Quinn, Liam James Elgaard, Garcia Erill, Genís, Santander, Cindy, Brüniche-Olsen, Anna, Liu, Xiaodong, Sinding, Mikkel Holger Strander, Heaton, M. P., Smith, T. P. L., Chrzanová Pecnerová, Patrícia, Bertola, Laura, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, De Jager, Deon, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus & Moltke, Ida, 2023, In: Molecular Ecology. 32, 8, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating admixture pedigrees of recent hybrids without a contiguous reference genome
Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
An LDLR missense variant poses high risk of familial hypercholesterolemia in 30% of Greenlanders and offers potential of early cardiovascular disease intervention
Jørsboe, E., Andersen, M. K., Skotte, L., Stæger, F. F., Færgeman, N. J., Hanghøj, K., Santander, C. G., Senftleber, N. K., Diaz, L. J., Overvad, M., Waples, R. K., Geller, F., Bjerregaard, P., Melbye, M., Larsen, C. V. L., Feenstra, B., Anders Koch, K., Jørgensen, M. E., Grarup, N., Moltke, I. & 2 others, , 2022, In: Human Genetics and Genomics Advances. 3, 4, 10 p., 100118.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Loss of sucrase-isomaltase function increases acetate levels and improves metabolic health in Greenlandic cohorts
Andersen, M. K., Skotte, L., Jørsboe, E., Polito, R., Stæger, F. F., Aldiss, P., Hanghøj, K., Waples, R. K., Santander, C. G., Grarup, N., Dahl-Petersen, I. K., Diaz, L. J., Overvad, M., Senftleber, N. K., Søborg, B., Larsen, C. V. L., Lemoine, C., Pedersen, O., Feenstra, B., Bjerregaard, P. & 9 others, , 2022, In: Gastroenterology. 162, 4, p. 1171-1182.e3Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Detecting selection in low-coverage high-throughput sequencing data using principal component analysis
Meisner, Jonas, Albrechtsen, Anders & Hanghøj, Kristian Ebbesen, 2021, In: BMC Bioinformatics. 22, 13 p., 470.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High genetic diversity and low differentiation reflect the ecological versatility of the African leopard
Chrzanová Pecnerová, Patrícia, Garcia Erill, Genís, Liu, Xiaodong, Nursyifa, Casia, Waples, R. K., Santander, Cindy, Quinn, Liam James Elgaard, Frandsen, P., Meisner, Jonas, Stæger, Frederik Filip Vinggaard, Rasmussen, Malthe Sebro, Brüniche-Olsen, Anna, Jørgensen, C. H. F., Rodrigues da Fonseca, Rute Andreia, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus, Moltke, Ida & Hanghøj, Kristian Ebbesen, 2021, In: Current Biology. 31, 9, p. 1862-1871, e1-e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data
Nøhr, A. K., Hanghøj, Kristian Ebbesen, Garcia Erill, Genís, Li, Zilong, Moltke, Ida & Albrechtsen, Anders, 2021, In: G3: Genes, Genomes, Genetics. 11, 8, 8 p., jkab174.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Targeted conservation genetics of the endangered chimpanzee
Frandsen, P., Fontsere, C., Nielsen, S. V., Hanghøj, Kristian Ebbesen, Castejon-Fernandez, N., Lizano, E., Hughes, D., Hernandez-Rodriguez, J., Korneliussen, Thorfinn Sand, Carlsen, F., Siegismund, Hans Redlef, Mailund, T., Marques-Bonet, T. & Hvilsom, C., 2020, In: Heredity. 125, 1-2, p. 15-27 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders
Andersen, M. K., Jørsboe, E., Skotte, L., Hanghøj, K., Sandholt, C. H., Moltke, I., Grarup, N., Kern, T., Mahendran, Y., Søborg, B., Bjerregaard, P., Larsen, C. V. L., Dahl-Petersen, I. K., Tiwari, H. K., Feenstra, B., Koch, A., Wiener, H. W., Hopkins, S. E., Pedersen, O., Melbye, M. & 4 others, , 2020, In: PLOS Genetics. 16, 1, 17 p., e1008544.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding
Hanghøj, Kristian Ebbesen, Moltke, Ida, Andersen, P. A., Manica, A. & Korneliussen, Thorfinn Sand, May 2019, In: GigaScience. 8, 5, 9 p., giz034.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage
Hanghøj, Kristian Ebbesen, Renaud, Gabriel, Albrechtsen, Anders & Orlando, L., 2019, In: GigaScience. 8, 4, 6 p., giz025.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples
Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Korneliussen, Thorfinn Sand, Willerslev, Eske & Orlando, L., 2019, In: Genetics (Print). 212, 3, p. 587-614 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series
Fages, A., Hanghøj, K., Khan, N., Gaunitz, C., Seguin-Orlando, A., Leonardi, M., McCrory Constantz, C., Gamba, C., Al-Rasheid, K. A. S., Albizuri, S., Alfarhan, A. H., Allentoft, M., Alquraishi, S., Anthony, D., Baimukhanov, N., Barrett, J. H., Bayarsaikhan, J., Benecke, N., Bernáldez-Sánchez, E., Berrocal-Rangel, L. & 101 others, , 2019, In: Cell. 177, 6, p. 1419-1435, e1-e31Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Ancient genomes revisit the ancestry of domestic and Przewalski's horses
Gaunitz, C., Fages, A. A., Hanghøj, K. E., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I. J., Felkel, S., Bignon-Lau, O., Damgaard, P. D. B., Mittnik, A., Mohaseb, A. F., Davoudi, H., Alquraishi, S., Alfarhan, A. H., Al-Rasheid, K. A. S., Crubézy, E., Benecke, N., Olsen, S. & 27 others, , 2018, In: Science. 360, 6384, p. 111-114 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic investigations of horse domestication using ancient DNA and a novel statistical method for epigenomic inference from ancient DNA sequencing data
Hanghøj, Kristian Ebbesen, 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Oral health status in historic population: Macroscopic and metagenomic evidence
Willmann, C., Mata, X., Hanghøj, Kristian Ebbesen, Tonasso, L., Tisseyre, L., Jeziorski, C., Cabot, E., Chevet, P., Crubézy, E., Orlando, L., Esclassan, R., Thèves, C. & Caramelli, D., 2018, In: PLOS ONE. 13, 5, 18 p., e0196482.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample
Jørsboe, E., Hanghøj, Kristian Ebbesen & Albrechtsen, Anders, 1 Oct 2017, In: Bioinformatics. 33, 19, p. 3148-3150 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining bleach and mild predigestion improves ancient DNA recovery from bones
Boessenkool, S., Hanghøj, Kristian Ebbesen, Nistelberger, H. M., Der Sarkissian, C., Gondek, A. T., Orlando, L. A. A., Barrett, J. H. & Star, B., Jul 2017, In: Molecular Ecology Resources. 17, 4, p. 742–751 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
gargammel: a sequence simulator for ancient DNA
Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Willerslev, Eske & Orlando, L. A. A., 2017, In: Bioinformatics. 33, 4, p. 577-579 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data
Louvel, G., Der Sarkissian, C., Hanghøj, Kristian Ebbesen & Orlando, L. A. A., Nov 2016, In: Molecular Ecology Resources. 16, 6, p. 1415-1427 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The evolutionary origin and genetic makeup of domestic horses
Sanz, P. L., Fages, A. A., Gaunitz, Charleen, Leonardi, M., Wagner, S., Khan, N., Hanghøj, Kristian Ebbesen, Alquraishi, S. A., Alfarhan, A. H., Al-Rasheid, K. A., Der Sarkissian, C., Schubert, Mikkel & Orlando, L. A. A., Oct 2016, In: Genetics. 204, 2, p. 423-434 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Clonal yeast biofilms can reap competitive advantages through cell differentiation without being obligatorily multicellular
Regenberg, Birgitte, Hanghøj, Kristian Ebbesen, Andersen, K. S. & Boomsma, Jacobus J., 2016, In: Royal Society of London. Proceedings B. Biological Sciences. 283, 1842, 8 p., 20161303.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing
Gamba, C., Hanghøj, Kristian Ebbesen, Gaunitz, Charleen, Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Bradley, D. G. & Orlando, L. A. A., 2016, In: Molecular Ecology Resources. 16, 2, p. 459-469 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast, accurate and automatic ancient nucleosome and methylation maps with epiPALEOMIX
Hanghøj, Kristian Ebbesen, Seguin-Orlando, A., Schubert, Mikkel, Madsen, T., Pedersen, J. S., Willerslev, Eske & Orlando, L. A. A., 2016, In: Molecular Biology and Evolution. 33, 12, p. 3284-3298 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 146844414
Most downloads
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259
downloads
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
230
downloads
Fast, accurate and automatic ancient nucleosome and methylation maps with epiPALEOMIX
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
207
downloads
gargammel: a sequence simulator for ancient DNA
Research output: Contribution to journal › Journal article › Research › peer-review
Published