Sune Darkner

Sune Darkner

Associate Professor

  • Image Analysis, Computational Modelling and Geometry

    Universitetsparken 5, 2100 København Ø

    Phone: +45 35 33 57 02Mobile: +45 21 30 85 84

  1. 2019
  2. Published

    Deterministic Group Tractography with Local Uncertainty Quantification. / Holm, Andreas Nugaard; Feragen, Aasa; Dela Haije, Tom; Darkner, Sune.

    Computational Diffusion: International MICCAI Workshop, Granada,. ed. / Elisenda Bonet-Carne; Francesco Grussu; Lipeng Ning; Farshid Sepehrband; Chantal M. W. Tax. 226249. ed. Springer, 2019. p. 377-386 (Mathematics and Visualization).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  3. Published

    Data Driven Inverse Kinematics of Soft Robots using Local Models. / Holsten, Fredrik; Engell-norregard, Morten Pol; Darkner, Sune; Erleben, Kenny.

    2019 International Conference on Robotics and Automation (ICRA). IEEE, 2019. p. 6251-6257.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  4. Published

    A Highly Accurate Model Based Registration Method for FIB-SEM Images of Neurons. / Stephensen, Hans Jacob Teglbjærg; Darkner, Sune; Sporring, Jon.

    In: arXiv.org, 2019.

    Research output: Contribution to journalJournal articleResearch

  5. 2018
  6. Published

    Collocation for diffeomorphic deformations in medical image registration. / Darkner, Sune; Pai, Akshay Sadananda Uppinakudru; Liptrot, Matthew George; Sporring, Jon.

    In: I E E E Transactions on Pattern Analysis and Machine Intelligence, Vol. 40, No. 7, 2018, p. 1570-1583.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Safety and Efficacy of Mesenchymal Stem Cells for Radiation-Induced Xerostomia : A Randomized, Placebo-Controlled Phase 1/2 Trial (MESRIX). / Grønhøj, Christian; Jensen, David H; Vester-Glowinski, Peter; Jensen, Siri Beier; Bardow, Allan; Oliveri, Roberto S; Fog, Lea Munthe; Specht, Lena; Thomsen, Carsten; Darkner, Sune; Jensen, Michael; Müller, Vera; Kiss, Katalin; Agander, Tina; Andersen, Elo; Fischer-Nielsen, Anne; von Buchwald, Christian.

    In: International Journal of Radiation Oncology, Biology, Physics, Vol. 101, No. 3, 01.07.2018, p. 581-592.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks. / Sigurdsson, Björn; Darkner, Sune; Sommer, Stefan Horst; Mortensen, Kristian Nygaard; Sanggaard, Simon; Kostrikov, Serhii; Nedergaard, Maiken.

    2018. Abstract from Joint Annual Meeting ISMRM-ESMRMB 2018, Paris, France.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  9. 2017
  10. Published

    First-in-man mesenchymal stem cells for radiation-induced xerostomia (MESRIX) : study protocol for a randomized controlled trial. / Grønhøj, Christian; Jensen, David Hebbelstrup; Glovinski, Peter Viktor; mpw981, mpw981; Jensen, Allan Bardow; Oliveri, Roberto Stefan; Specht, Lena; Thomsen, Carsten; Darkner, Sune; Kiss, Katalin; Fischer-Nielsen, Anne; von Buchwald, Christian.

    In: Trials, Vol. 18, No. 1, 108, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Density-based non-rigid registration of diffusion-weighted images. / Jensen, Henrik Grønholt; Lauze, Francois Bernard; Nielsen, Mads; Darkner, Sune.

    2017. Abstract from 25th ISMRM Annual Meeting, Honolulu, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  12. Published

    3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy. / Khanmohammadi, Mahdieh; Darkner, Sune; Nava, Nicoletta; Nyengaard, J. R.; Wegener, G.; Popoli, M.; Sporring, Jon.

    In: Journal of Microscopy, Vol. 265, No. 1, 2017, p. 101–110.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Streamlet Tractography. / Liptrot, Matthew George; Darkner, Sune; Feragen, Aasa; Lauze, Francois Bernard.

    2017. Abstract from 25th ISMRM Annual Meeting, Honolulu, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  14. Published

    A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images. / Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Raket, Lars Lau; Kühnel, Line; Darkner, Sune; Sørensen, Lauge; Nielsen, Mads.

    Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. ed. / Henning Müller; B. Michael Kelm; Tal Arbel; Weidong Cai; M. Jorge Cardoso; Georg Langs; Bjoern Menze; Dmitris Metaxas; Albert Montillo; William M. Wells; Shaoting Zhang; Albert C. S. Chung; Mark Jenkinson; Annemie Ribbens. Springer, 2017. p. 151-159 (Lecture notes in computer science, Vol. 10081).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  15. Published

    Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment. / Pai, Akshay Sadananda Uppinakudru; Pillai, Jagan A.; Sørensen, Lauge; Darkner, Sune; Sommer, Stefan Horst; Nielsen, Mads.

    In: Alzheimer's & Dementia, Vol. 13, No. 7, supplement, P4-225, 07.2017, p. P1356.

    Research output: Contribution to journalConference abstract in journalResearch

  16. 2016
  17. Published

    Finding significantly connected voxels based on histograms of connection strengths. / Kasenburg, Niklas; Pedersen, Morten Vester; Darkner, Sune.

    Medical Imaging 2016: Image Processing. ed. / Martin A. Styner; Elsa D. Angelini. SPIE - International Society for Optical Engineering, 2016. 978431 (Progress in Biomedical Optics and Imaging; No. 39, Vol. 17).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  18. Published

    Structural parcellation of the thalamus using shortest-path tractography. / Kasenburg, Niklas; Darkner, Sune; Hahn, Ute; Liptrot, Matthew George; Feragen, Aasa.

    2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE, 2016. p. 559-563 7493330.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  19. Published

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation. / Michalkiewicz, Mateusz Dawid; Pai, Akshay Sadananda Uppinakudru; Leung, Kelvin K.; Sommer, Stefan Horst; Darkner, Sune; Sørensen, Lauge; Sporring, Jon; Nielsen, Mads.

    Medical imaging 2016: Image processing. ed. / Martin A. Styner; Elsa D. Angelini. SPIE - International Society for Optical Engineering, 2016. 978406 (Progress in Biomedical Optics and Imaging).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  20. Published

    Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease. / Pai, Akshay Sadananda Uppinakudru; Sporring, Jon; Darkner, Sune; Dam, Erik Bjørnager; Lillholm, Martin; Jørgensen, Dan; Oh, Joonmi; Chen, Gennan; Suhy, Joyce; Sørensen, Lauge; Nielsen, Mads.

    In: SPIE Journal of Medical Imaging, Vol. 3, No. 1, 014005, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions. / Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Sørensen, Lauge; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    In: IEEE transactions on medical imaging, Vol. 35, No. 6, 2016, p. 1369-1380.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The minimal energetic requirement of sustained awareness after brain injury. / Stender, Johan; Mortensen, Kristian Nygaard; Thibaut, Aurore; Darkner, Sune; Laureys, Steven; Gjedde, Albert; Kupers, Ron.

    In: Current Biology, Vol. 26, No. 11, 06.06.2016, p. 1494-1499.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. 2015
  24. Published

    Locally orderless registration for diffusion weighted images. / Jensen, Henrik Grønholt; Lauze, Francois Bernard; Nielsen, Mads; Darkner, Sune.

    Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. ed. / Nassir Navab; Joachim Hornegger; William M. Wells; Alejandro F. Frangi. Springer, 2015. p. 305-312 (Lecture notes in computer science, Vol. 9350).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  25. Published

    Multimodal brain extraction from structural MRI using co-registered FDG-PET. / Jensen, Henrik Grønholt; Federspiel, Frederik Vilhelm Koch; Ptito, Maurice; Nielsen, Mads; Gjedde, Albert; Keller, Sune Høgild; Law, Ian; Kupers, Ron; Darkner, Sune.

    2015. Paper presented at Computational Methods for Molecular Imaging (CMMI) 2015, .

    Research output: Contribution to conferencePaperResearch

  26. Published

    Automatic correction of dental artifacts in PET/MRI. / Ladefoged, Claes N.; Andersen, Flemming L.; Keller, Sune; Beyer, Thomas; Law, Ian; Højgaard, Liselotte; Darkner, Sune; Lauze, Francois Bernard.

    In: SPIE Journal of Medical Imaging, Vol. 2, No. 2, 024009, 2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error. / Pai, Akshay Sadananda Uppinakudru; Klein, Stefan; Sommer, Stefan Horst; Sørensen, Lauge; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, 2015. p. 35-47.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  28. Published

    Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error. / Pai, Akshay Sadananda Uppinakudru; Klein, Stefan; Sommer, Stefan Horst; Sørensen, Lauge Emil Borch Laurs; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , 2015. p. 35-47.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  29. Published

    Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies. / Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Darkner, Sune; Sørensen, Lauge Emil Borch Laurs; Sporring, Jon; Nielsen, Mads.

    2015. Abstract from 101st Scientific Assembly and Annual Meeting of the Radiological Society of North America , Chicago, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  30. Published

    Diffeomorphic image registration with automatic time-step adjustment. / Pai, Akshay Sadananda Uppinakudru; Klein, S.; Sommer, Stefan Horst; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on. IEEE, 2015. p. 1085-1088.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

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