Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation
Research output: Contribution to journal › Journal article › Research › peer-review
Standard
Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation. / Hansen, Bogi Karbech; Gupta, Rajat; Baldus, Linda; Lyon, David; Narita, Takeo; Lammers, Michael; Choudhary, Chunaram; Weinert, Brian T.
In: Nature Communications, Vol. 10, 1055, 2019.Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
APA
Vancouver
Author
Bibtex
}
RIS
TY - JOUR
T1 - Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation
AU - Hansen, Bogi Karbech
AU - Gupta, Rajat
AU - Baldus, Linda
AU - Lyon, David
AU - Narita, Takeo
AU - Lammers, Michael
AU - Choudhary, Chunaram
AU - Weinert, Brian T.
PY - 2019
Y1 - 2019
N2 - Lysine acetylation is a reversible posttranslational modification that occurs at thousands of sites on human proteins. However, the stoichiometry of acetylation remains poorly characterized, and is important for understanding acetylation-dependent mechanisms of protein regulation. Here we provide accurate, validated measurements of acetylation stoichiometry at 6829 sites on 2535 proteins in human cervical cancer (HeLa) cells. Most acetylation occurs at very low stoichiometry (median 0.02%), whereas high stoichiometry acetylation (>1%) occurs on nuclear proteins involved in gene transcription and on acetyltransferases. Analysis of acetylation copy numbers show that histones harbor the majority of acetylated lysine residues in human cells. Class I deacetylases target a greater proportion of high stoichiometry acetylation compared to SIRT1 and HDAC6. The acetyltransferases CBP and p300 catalyze a majority (65%) of high stoichiometry acetylation. This resource dataset provides valuable information for evaluating the impact of individual acetylation sites on protein function and for building accurate mechanistic models.
AB - Lysine acetylation is a reversible posttranslational modification that occurs at thousands of sites on human proteins. However, the stoichiometry of acetylation remains poorly characterized, and is important for understanding acetylation-dependent mechanisms of protein regulation. Here we provide accurate, validated measurements of acetylation stoichiometry at 6829 sites on 2535 proteins in human cervical cancer (HeLa) cells. Most acetylation occurs at very low stoichiometry (median 0.02%), whereas high stoichiometry acetylation (>1%) occurs on nuclear proteins involved in gene transcription and on acetyltransferases. Analysis of acetylation copy numbers show that histones harbor the majority of acetylated lysine residues in human cells. Class I deacetylases target a greater proportion of high stoichiometry acetylation compared to SIRT1 and HDAC6. The acetyltransferases CBP and p300 catalyze a majority (65%) of high stoichiometry acetylation. This resource dataset provides valuable information for evaluating the impact of individual acetylation sites on protein function and for building accurate mechanistic models.
U2 - 10.1038/s41467-019-09024-0
DO - 10.1038/s41467-019-09024-0
M3 - Journal article
C2 - 30837475
VL - 10
JO - Nature Communications
JF - Nature Communications
SN - 2041-1723
M1 - 1055
ER -
ID: 214462444