Ole Winther

Ole Winther

Professor MSO

Member of:


    1. 2019
    2. Published

      SignalP 5.0 improves signal peptide predictions using deep neural networks. / Armenteros, José Juan Almagro; Tsirigos, Konstantinos; Sønderby, Casper Kaae; Petersen, Thomas Nordahl; Winther, Ole; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

      In: Nature Biotechnology, Vol. 37, No. 4, 18.02.2019, p. 420-423.

      Research output: Contribution to journalJournal articleCommunication

    3. Published

      Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. / Kinalis, Savvas; Nielsen, Finn Cilius; Winther, Ole; Bagger, Frederik Otzen.

      In: BMC Bioinformatics, Vol. 20, 379, 2019.

      Research output: Contribution to journalJournal articleResearchpeer-review

    4. Published

      NetSurfP-2.0 : improved prediction of protein structural features by integrated deep learning. / Klausen, Michael Schantz; Jespersen, Martin Closter; Nielsen, Henrik; Jensen, Kamilla Kjærgaard; Jurtz, Vanessa Isabell; Sønderby, Casper Kaae; Sommer, Morten Otto Alexander; Winther, Ole; Nielsen, Morten; Petersen, Bent; Marcatili, Paolo.

      In: Proteins: Structure, Function and Bioinformatics, Vol. 87, No. 6, 2019, p. 520-527.

      Research output: Contribution to journalJournal articleResearchpeer-review

    5. 2018
    6. Published

      SinaPlot : an enhanced chart for simple and truthful representation of single observations over multiple classes. / Sidiropoulos, Nikos; Sohi, Sina Hadi; Pedersen, Thomas Lin; Porse, Bo Torben; Winther, Ole; Rapin, Nicolas; Bagger, Frederik Otzen.

      In: Journal of Computational and Graphical Statistics, Vol. 27, No. 3, 2018, p. 673-676.

      Research output: Contribution to journalJournal articleResearchpeer-review

    7. 2017
    8. Published

      An introduction to deep learning on biological sequence data : examples and solutions. / Jurtz, Vanessa Isabell; Johansen, Alexander Rosenberg; Nielsen, Morten; Almagro Armenteros, Jose Juan; Nielsen, Henrik; Sønderby, Casper Kaae; Winther, Ole; Sønderby, Søren Kaae.

      In: Bioinformatics, Vol. 33, No. 22, 15.11.2017, p. 3685-3690.

      Research output: Contribution to journalReviewResearchpeer-review

    9. Published

      DeepLoc : prediction of protein subcellular localization using deep learning. / Almagro Armenteros, Jose Juan; Sønderby, Casper Kaae; Sønderby, Søren Kaae; Nielsen, Henrik; Winther, Ole.

      In: Bioinformatics, Vol. 33, No. 21, 01.11.2017, p. 3387-3395.

      Research output: Contribution to journalJournal articleResearchpeer-review

    10. Published

      The Bipolar Illness Onset study : research protocol for the BIO cohort study. / Kessing, Lars Vedel; Munkholm, Klaus; Faurholt-Jepsen, Maria; Miskowiak, Kamilla Woznica; Nielsen, Lars Bo; Frikke-Schmidt, Ruth; Ekstrøm, Claus Thorn; Winther, Ole; Pedersen, Bente Klarlund; Poulsen, Henrik Enghusen; McIntyre, Roger S.; Kapczinski, Flavio; Gattaz, Wagner F.; Bardram, Jakob; Frost, Mads; Mayora, Oscar; Knudsen, Gitte Moos; Phillips, Mary; Vinberg, Maj.

      In: BMJ Open, Vol. 7, No. 6, e015462, 2017.

      Research output: Contribution to journalJournal articleResearchpeer-review

    11. 2016
    12. Published

      Angiotensinogen and HLA class II predict bevacizumab response in recurrent glioblastoma patients. / Urup, Thomas; Michaelsen, Signe Regner; Olsen, Lars Rønn; Toft, Anders; Christensen, Ib Jarle; Grunnet, Kirsten; Winther, Ole; Broholm, Helle; Kosteljanetz, Michael; Issazadeh-Navikas, Shohreh; Poulsen, Hans Skovgaard; Lassen, Ulrik Niels.

      In: Molecular Oncology, Vol. 10, No. 8, 10.2016, p. 1160-1168.

      Research output: Contribution to journalJournal articleResearchpeer-review

    13. Published

      BloodSpot : a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis. / Bagger, Frederik Otzen; Sasivarevic, Damir; Hadi Sohi, Sina; Laursen, Linea Gøricke; Pundhir, Sachin; Sønderby, Casper Kaae; Winther, Ole; Rapin, Nicolas; Porse, Bo T.

      In: Nucleic Acids Research, Vol. 44, No. D1, 04.01.2016, p. D917-24.

      Research output: Contribution to journalJournal articleResearchpeer-review

    14. Published

      Autoencoding beyond pixels using a learned similarity metric. / Larsen, Anders Boesen Lindbo; Sønderby, Søren Kaae; Larochelle, Hugo; Winther, Ole.

      Proceedings of The 33rd International Conference on Machine Learning. ed. / Maria Florina Balcan; Kilian Q. Weinberger. 2016. p. 1558–1566 (JMLR: Workshop and Conference Proceedings, Vol. 48).

      Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

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