Chuna Ram Choudhary

Chuna Ram Choudhary

professor, group leader


  1. Published

    p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage. / Borisova, Marina E; Voigt, Andrea; Tollenaere, Maxim A.X.; Sahu, Sanjeeb Kumar; Juretschke, Thomas; Kreim, Nastasja; Mailand, Niels; Choudhary, Chunaram; Bekker-Jensen, Simon; Akutsu, Masato; Wagner, Sebastian A; Beli, Petra.

    In: Nature Communications, Vol. 9, 1017, 2018, p. 1-16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    lncRNA Panct1 Maintains Mouse Embryonic Stem Cell Identity by Regulating TOBF1 Recruitment to Oct-Sox Sequences in Early G1. / Chakraborty, Debojyoti; Paszkowski-Rogacz, Maciej; Berger, Nicolas; Ding, Li; Mircetic, Jovan; Fu, Jun; Iesmantavicius, Vytautas; Choudhary, Chunaram; Anastassiadis, Konstantinos; Stewart, A Francis; Buchholz, Frank.

    In: Cell Reports, Vol. 21, No. 11, 12.12.2017, p. 3012-3021.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Ubiquitin-SUMO Circuitry Controls Activated Fanconi Anemia ID Complex Dosage in Response to DNA Damage. / Gibbs-Seymour, Ian; Oka, Yasuyoshi; Rajendra, Eeson; Weinert, Brian Tate; Passmore, Lori A; Patel, Ketan J; Olsen, Jesper V; Choudhary, Chuna Ram; Bekker-Jensen, Simon; Mailand, Niels.

    In: Molecular Cell, Vol. 57, No. 1, 01.2015, p. 150-64.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells. / Oka, Yasuyoshi; Varmark, Hanne; Vitting-Seerup, Kristoffer; Beli, Petra; Waage, Johannes Eichler; Hakobyan, Anna; Mistrik, Martin; Choudhary, Chuna Ram; Rohde, Mikkel; Bekker-Jensen, Simon; Mailand, Niels.

    In: E M B O Reports, Vol. 15, No. 9, 2014, p. 956-964.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β. / J D'Souza, Rochelle C; Knittle, Anna M; Nagaraj, Nagarjuna; van Dinther, Maarten; Choudhary, Chuna Ram; Ten Dijke, Peter; Mann, Matthias; Sharma, Kirti.

    In: Science signaling, Vol. 7, No. 335, 07.2014, p. rs5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome. / Weinert, Brian T.; Narita, Takeo; Satpathy, Shankha; Srinivasan, Balaji; Hansen, Bogi K; Schölz, Christian; Hamilton, William B.; Zucconi, Beth E; Wang, Wesley W; Liu, Wenshe R; Brickman, Joshua M; Kesicki, Edward A; Lai, Albert; Bromberg, Kenneth D; Cole, Philip A; Choudhary, Chunaram.

    In: Cell, Vol. 174, No. 1, 2018, p. 231-244.e12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    The growing landscape of lysine acetylation links metabolism and cell signalling. / Choudhary, Chuna Ram; Weinert, Brian Tate; Nishida, Yuya; Verdin, Eric; Mann, Matthias.

    In: Nature Reviews. Molecular Cell Biology, Vol. 15, No. 8, 23.07.2014, p. 536-50.

    Research output: Contribution to journalReviewResearchpeer-review

  8. Published

    The Spindle Assembly Checkpoint Is Not Essential for Viability of Human Cells with Genetically Lowered APC/C Activity. / Wild, Thomas; Larsen, Marie Sofie Yoo; Narita, Takeo; Schou, Julie; Nilsson, Jakob; Choudhary, Chuna Ram.

    In: Cell Reports, Vol. 14, No. 8, 01.03.2016, p. 1829-40.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. / Povlsen, Lou K; Beli, Petra; Wagner, Sebastian A; Poulsen, Sara L; Sylvestersen, Kathrine B; Poulsen, Jon Wriedt; Nielsen, Michael L; Bekker-Jensen, Simon; Mailand, Niels; Choudhary, Chuna Ram.

    In: Nature Cell Biology, Vol. 14, No. 10, 10.2012, p. 1089-98.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation. / Satpathy, Shankha; Wagner, Sebastian A; Beli, Petra; Gupta, Rajat; Kristiansen, Trine A; Malinova, Dessislava; Francavilla, Chiara; Tolar, Pavel; Bishop, Gail A; Hostager, Bruce S; Choudhary, Chuna Ram.

    In: Molecular Systems Biology, Vol. 11, No. 6, 810, 2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells. / Ding, Li; Paszkowski-Rogacz, Maciej; Winzi, Maria; Chakraborty, Debojyoti; Theis, Mirko; Singh, Sukhdeep; Ciotta, Giovanni; Poser, Ina; Roguev, Assen; Chu, Wai Kit; Choudhary, Chuna Ram; Mann, Matthias; Stewart, A Francis; Krogan, Nevan; Buchholz, Frank.

    In: Cell Systems, Vol. 1, No. 2, 26.08.2015, p. 141-151.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry. / Jungmichel, Stephanie; Sylvestersen, Kathrine B; Choudhary, Chuna Ram; Nguyen, Steve; Mann, Matthias; Nielsen, Michael L.

    In: Cell Reports, Vol. 6, No. 3, 13.02.2014, p. 578-91.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    STK3 is a therapeutic target for a subset of acute myeloid leukemias. / Camgoz, Aylin; Paszkowski-Rogacz, Maciej; Satpathy, Shankha; Wermke, Martin; Hamann, Martin V.; von Bonin, Malte; Choudhary, Chunaram; Knapp, Stefan; Buchholz, Frank.

    In: OncoTarget, Vol. 9, No. 39, 2018, p. 25458-25473.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes. / Wagner, Sebastian A; Satpathy, Shankha; Beli, Petra; Choudhary, Chuna Ram.

    In: E M B O Journal, Vol. 35, No. 17, 01.09.2016, p. 1868-1884.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    SOCS1 cooperates with FLT3-ITD in the development of myeloproliferative disease by promoting the escape from external cytokine control. / Reddy, P.N.G.; Serve, H.; Brandts, C.H.; Sargin, B.; Choudhary, C.; Müller-Tidow, C.; Berdel, W.E.; Stein, S.; Grez, M.

    In: Blood, Vol. 120, No. 8, 23.08.2012, p. 1691-1702.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Redox-sensitive alteration of replisome architecture safeguards genome integrity. / Somyajit, Kumar; Gupta, Rajat; Sedlackova, Hana; Neelsen, Kai John; Ochs, Fena; Rask, Maj-Britt; Choudhary, Chunaram; Lukas, Jiri.

    In: Science, Vol. 358, No. 6364, 10.11.2017, p. 797-802.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    RNF111/Arkadia is a SUMO-targeted ubiquitin ligase that facilitates the DNA damage response. / Poulsen, Sara L; Hansen, Rebecca K; Wagner, Sebastian A; van Cuijk, Loes; van Belle, Gijsbert J; Streicher, Werner; Wikström, Mats; Choudhary, Chuna Ram; Houtsmuller, Adriaan B; Marteijn, Jurgen A; Bekker-Jensen, Simon; Mailand, Niels.

    In: Journal of Cell Biology, Vol. 201, No. 6, 10.06.2013, p. 797-807.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response. / Beli, Petra; Lukashchuk, Natalia; Wagner, Sebastian A; Weinert, Brian T; Olsen, Jesper V; Baskcomb, Linda; Mann, Matthias; Jackson, Stephen P; Choudhary, Chuna Ram.

    In: Molecular Cell, Vol. 46, No. 2, 2012, p. 212-25.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3. / Sol, E-ri Maria; Wagner, Sebastian A; Weinert, Brian T; Kumar, Amit; Kim, Hyun-Seok; Deng, Chu-Xia; Choudhary, Chuna Ram.

    In: PloS one, Vol. 7, No. 12, 07.12.2012, p. e50545.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns. / Lundby, Alicia; Hansen, Kasper Lage; Weinert, Brian Tate; Breinholt Bekker-Jensen, Dorte; Secher, Anna; Skovgaard, Tine; Kelstrup, Christian; Dmytriyev, Anatoliy; Choudhary, Chuna Ram; Lundby, Carsten; Olsen, Jesper Velgaard.

    In: Cell Reports, Vol. 2, No. 2, 30.08.2012, p. 419-431.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Proteomic analyses reveal divergent ubiquitylation site patterns in murinetissues. / Wagner, Sebastian A; Beli, Petra; Weinert, Brian T; Schölz, Christian Friedhold; Kelstrup, Christian D; Young, Clifford; Nielsen, Michael Lund; Olsen, Jesper V; Brakebusch, Cord; Choudhary, Chuna Ram.

    In: Molecular & Cellular Proteomics, 2012.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation. / Weinert, Brian T; Wagner, Sebastian A; Horn, Heiko; Henriksen, Peter; Liu, Wenshe R; Olsen, Jesper V; Jensen, Lars J; Choudhary, Chuna Ram.

    In: Science Signaling, Vol. 4, No. 183, 2011, p. ra48.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. / Henriksen, Peter; Wagner, Sebastian Alexander; Weinert, Brian Tate; Sharma, Satyan; Bacinskaja, Giedré; Rehman, Michael; Juffer, André H.; Walther, Tobias C.; Lisby, Michael; Choudhary, Chuna Ram.

    In: Molecular & Cellular Proteomics, Vol. 11, No. 11, 2012, p. 1510-1522.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Proteome-wide analysis of SUMO2 targets in response to pathological DNA replication stress in human cells. / Bursomanno, Sara; Beli, Petra; Khan, Asif M; Minocherhomji, Sheroy; Wagner, Sebastian Alexander; Bekker-Jensen, Simon; Mailand, Niels; Choudhary, Chuna Ram; Hickson, Ian D.; Liu, Ying.

    In: DNA Repair, Vol. 25, 01.2015, p. 84-96.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Predicting post-translational lysine acetylation using support vector machines. / Gnad, Florian; Ren, Shubin; Choudhary, Chunaram; Cox, Jürgen; Mann, Matthias.

    In: Bioinformatics, Vol. 26, No. 13, 01.07.2010, p. 1666-8.

    Research output: Contribution to journalJournal articleResearchpeer-review

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